SMTL ID : 1i6h.1

RNA POLYMERASE II ELONGATION COMPLEX

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.30 Å

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-mer

Ligands

1 x G- A- C- C- A- G- G- C- A: 5'-R(P*GP*AP*CP*CP*AP*GP*GP*CP*A)-3'(Non-covalent)

G-A-C-C-A-G-G-C-A.1: 23 residues within 4Å: Chain A: T.4, G.5, C.6, C.7, T.8, G.9, G.10, T.11, C.12, T.13 Chain B: K.323, R.446, D.483, D.485, T.831 Chain C: N.465, Q.481, Q.531, Q.776, K.979, K.987, H.1097 Ligands: MG.2 Protein-ligand interaction information (PLIP) not available

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 5 residues within 4Å: Chain B: D.481, D.483, D.485 Ligands: G-A-C-C-A-G-G-C-A.1, G-A-C-C-A-G-G-C-A.1 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:D.481, B:D.483, B:D.483, B:D.485

8 x ZN: ZINC ION(Non-covalent)

ZN.3: 4 residues within 4Å: Chain B: M.108, C.110, C.148, C.167 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:C.110, B:C.167 ZN.4: 4 residues within 4Å: Chain B: C.67, C.70, C.77, H.80 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:C.67, B:C.70, B:H.80 ZN.5: 4 residues within 4Å: Chain C: C.1163, C.1166, C.1182, C.1185 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.1163, C:C.1166, C:C.1182, C:C.1185 ZN.6: 5 residues within 4Å: Chain D: C.86, C.88, H.91, C.92, C.95 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.86, D:C.88, D:C.92, D:C.95 ZN.7: 5 residues within 4Å: Chain H: C.7, C.10, C.29, T.31, C.32 4 PLIP interactions: 4 interactions with chain H Metal complexes: H:C.7, H:C.10, H:C.29, H:C.32 ZN.8: 5 residues within 4Å: Chain H: C.75, C.78, C.103, C.106, H.108 4 PLIP interactions: 4 interactions with chain H Metal complexes: H:C.75, H:C.78, H:C.103, H:C.106 ZN.9: 4 residues within 4Å: Chain I: C.7, C.10, C.45, C.46 4 PLIP interactions: 4 interactions with chain I Metal complexes: I:C.7, I:C.10, I:C.45, I:C.46 ZN.10: 4 residues within 4Å: Chain K: C.31, C.34, C.48, C.51 4 PLIP interactions: 4 interactions with chain K Metal complexes: K:C.31, K:C.34, K:C.48, K:C.51

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gnatt, A.L. et al., Structural basis of transcription: an RNA polymerase II elongation complex at 3.3 A resolution. Science (2001)

Release Date

2001-04-23

Peptides

DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT: B
DNA-DIRECTED RNA POLYMERASE II 140KD POLYPEPTIDE: C
DNA-DIRECTED RNA POLYMERASE II 45KD POLYPEPTIDE: D
DNA-DIRECTED RNA POLYMERASE II 27KD POLYPEPTIDE: E
DNA-DIRECTED RNA POLYMERASE II 23KD POLYPEPTIDE: F
DNA-DIRECTED RNA POLYMERASE II 14.5KD POLYPEPTIDE: G
DNA-DIRECTED RNA POLYMERASE II 14.2KD POLYPEPTIDE: H
DNA-DIRECTED RNA POLYMERASE II 8.3KD POLYPEPTIDE: I
DNA-DIRECTED RNA POLYMERASE II 13.6KD POLYPEPTIDE: J
DNA-DIRECTED RNA POLYMERASE II 7.7KD POLYPEPTIDE: K

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

B
A

C
B

D
C

E
E

F
F

G
H

H
I

I
J

J
K

K
L

DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT

DNA-DIRECTED RNA POLYMERASE II 140KD POLYPEPTIDE

DNA-DIRECTED RNA POLYMERASE II 45KD POLYPEPTIDE

DNA-DIRECTED RNA POLYMERASE II 27KD POLYPEPTIDE

DNA-DIRECTED RNA POLYMERASE II 23KD POLYPEPTIDE

DNA-DIRECTED RNA POLYMERASE II 14.5KD POLYPEPTIDE

DNA-DIRECTED RNA POLYMERASE II 14.2KD POLYPEPTIDE

DNA-DIRECTED RNA POLYMERASE II 8.3KD POLYPEPTIDE

DNA-DIRECTED RNA POLYMERASE II 13.6KD POLYPEPTIDE

DNA-DIRECTED RNA POLYMERASE II 7.7KD POLYPEPTIDE

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