SMTL ID : 6blp.1

Pol II elongation complex with an abasic lesion at i+1 position, soaking AMPCPP

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 3.20 Å
Oligo State
hetero-1-1-1-1-1-1-1-1-1-1-mer
Ligands
1 x A- U- C- G- A- G- A- G: RNA (5'-R(P*AP*UP*CP*GP*AP*GP*AP*G)-3')(Non-covalent)
8 x ZN: ZINC ION(Non-covalent)
2 x MG: MAGNESIUM ION(Non-covalent)
1 x APC: DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER(Non-covalent)
Links
RCSB   PDBe   PDBj   PDBsum   CATH   PLIP
Citation
Wang, W. et al., Structural basis of transcriptional stalling and bypass of abasic DNA lesion by RNA polymerase II. Proc. Natl. Acad. Sci. U.S.A. (2018)
Release Date
2018-02-28
Peptides
DNA-directed RNA polymerase II subunit RPB1: A
DNA-directed RNA polymerase II subunit RPB2: B
DNA-directed RNA polymerase II subunit RPB3: C
DNA-directed RNA polymerases I, II, and III subunit RPABC1: D
DNA-directed RNA polymerases I, II, and III subunit RPABC2: E
DNA-directed RNA polymerases I, II, and III subunit RPABC3: F
DNA-directed RNA polymerase II subunit RPB9: G
DNA-directed RNA polymerases I, II, and III subunit RPABC5: H
DNA-directed RNA polymerase II subunit RPB11: I
DNA-directed RNA polymerases I, II, and III subunit RPABC4: J
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
C
C
D
E
E
F
F
H
G
I
H
J
I
K
J
L

DNA-directed RNA polymerase II subunit RPB1

DNA-directed RNA polymerase II subunit RPB2

DNA-directed RNA polymerase II subunit RPB3

DNA-directed RNA polymerases I, II, and III subunit RPABC1

DNA-directed RNA polymerases I, II, and III subunit RPABC2

DNA-directed RNA polymerases I, II, and III subunit RPABC3

DNA-directed RNA polymerase II subunit RPB9

DNA-directed RNA polymerases I, II, and III subunit RPABC5

DNA-directed RNA polymerase II subunit RPB11

DNA-directed RNA polymerases I, II, and III subunit RPABC4

Related Entries With Identical Sequence

1dzf.1 | 1i3q.1 | 1i50.1 | 1i50.2 | 1i6h.1 | 1k83.1 | 1nik.1 | 1r5u.1 | 1r9s.1 | 1r9t.1 | 1sfo.1 | 1twa.1 | 1twc.1 | 1twf.1 | 1twf.2 | 1twg.1 | 1twg.2 | 1twg.3 | 1twh.1 | 1wcm.1 | 1y1v.1 | 1y1w.1 | 1y77.1 | 2b63.1 | 2b8k.1 | 2e2h.1 | 2e2i.1 | 2e2j.1 | 2ja5.1 | 2ja6.1  more...