SMTL ID : 7z1n.1

Structure of yeast RNA Polymerase III Delta C53-C37-C11

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

5 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: C.67, T.69, C.70, C.77, H.80 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.67, A:C.70, A:C.77, A:H.80 ZN.2: 4 residues within 4Å: Chain A: C.107, C.110, C.154, C.157 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.107, A:C.110, A:C.154, A:C.157 ZN.5: 5 residues within 4Å: Chain B: C.1095, C.1098, C.1107, T.1109, C.1110 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.1095, B:C.1098, B:C.1107, B:C.1110 ZN.6: 4 residues within 4Å: Chain I: C.7, C.10, C.45, C.46 4 PLIP interactions: 4 interactions with chain I Metal complexes: I:C.7, I:C.10, I:C.45, I:C.46 ZN.8: 4 residues within 4Å: Chain K: C.31, C.34, C.48, C.51 4 PLIP interactions: 4 interactions with chain K Metal complexes: K:C.31, K:C.34, K:C.48, K:C.51

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 3 residues within 4Å: Chain A: D.511, D.513 Chain O: G.24 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.511

2 x 1N7: CHAPSO(Non-covalent)

1N7.4: 4 residues within 4Å: Chain A: K.1134, V.1135, Y.1298, E.1321 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:V.1135, A:Y.1298 1N7.7: 4 residues within 4Å: Chain C: D.111, E.311, F.315 Chain J: K.140 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:E.311, C:F.315, C:F.315

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Girbig, M. et al., Architecture of the yeast Pol III pre-termination complex and pausing mechanism on poly(dT) termination signals. Cell Rep (2022)

Release Date

2022-08-31

Peptides

DNA-directed RNA polymerase III subunit RPC1: A
DNA-directed RNA polymerase III subunit RPC2: B
DNA-directed RNA polymerases I and III subunit RPAC1: C
DNA-directed RNA polymerase III subunit RPC9: D
DNA-directed RNA polymerases I, II, and III subunit RPABC1: E
DNA-directed RNA polymerases I, II, and III subunit RPABC2: F
DNA-directed RNA polymerase III subunit RPC8: G
DNA-directed RNA polymerases I, II, and III subunit RPABC3: H
DNA-directed RNA polymerases I, II, and III subunit RPABC5: I
DNA-directed RNA polymerases I and III subunit RPAC2: J
DNA-directed RNA polymerases I, II, and III subunit RPABC4: K
DNA-directed RNA polymerase III subunit RPC3: L
DNA-directed RNA polymerase III subunit RPC6: M
DNA-directed RNA polymerase III subunit RPC7: N

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
J

J
K

K
L

L
O

M
P

N
Q

DNA-directed RNA polymerase III subunit RPC1

DNA-directed RNA polymerase III subunit RPC2

DNA-directed RNA polymerases I and III subunit RPAC1

DNA-directed RNA polymerase III subunit RPC9

DNA-directed RNA polymerases I, II, and III subunit RPABC1

DNA-directed RNA polymerases I, II, and III subunit RPABC2

DNA-directed RNA polymerase III subunit RPC8

DNA-directed RNA polymerases I, II, and III subunit RPABC3

DNA-directed RNA polymerases I, II, and III subunit RPABC5

DNA-directed RNA polymerases I and III subunit RPAC2

DNA-directed RNA polymerases I, II, and III subunit RPABC4

DNA-directed RNA polymerase III subunit RPC3

DNA-directed RNA polymerase III subunit RPC6

DNA-directed RNA polymerase III subunit RPC7

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