SMTL ID : 7rim.1

RNA polymerase II elongation complex with hairpin polyamide Py-Im 1, scaffold 1

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 2.90 Å
Oligo State
hetero-1-1-1-1-1-1-1-1-1-1-mer
Ligands
1 x A- U- C- G- A- G- A- G- G: RNA(Non-covalent)
1 x 5N0: 3-({3-[(3-{[4-({4-[(4-{[4-({(2R)-2-amino-4-[(1-methyl-4-{[1-methyl-4-({1-methyl-4-[(1-methyl-1H-imidazole-2-carbonyl)amino]-1H-imidazole-2-carbonyl}amino)-1H-pyrrole-2-carbonyl]amino}-1H-pyrrole-2-carbonyl)amino]butanoyl}amino)-1-methyl-1H-imidazole-2-carbonyl]amino}-1-methyl-1H-pyrrole-2-carbonyl)amino]-1-methyl-1H-pyrrole-2-carbonyl}amino)-1-methyl-1H-pyrrole-2-carbonyl]amino}propyl)(methyl)amino]propyl}carbamoyl)benzoic acid(Non-covalent)
8 x ZN: ZINC ION(Non-covalent)
1 x MG: MAGNESIUM ION(Non-covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Oh, J. et al., Transcription treadmill: pyrrole-imidazole polyamide induces inhibition of transcription elongation in RNA polymerase II. To be published
Release Date
2022-01-12
Peptides
DNA-directed RNA polymerase II subunit RPB1: C
DNA-directed RNA polymerase II subunit RPB2: D
DNA-directed RNA polymerase II subunit RPB3: E
DNA-directed RNA polymerases I, II, and III subunit RPABC1: F
DNA-directed RNA polymerases I, II, and III subunit RPABC2: G
DNA-directed RNA polymerases I, II, and III subunit RPABC3: H
DNA-directed RNA polymerase II subunit RPB9: I
DNA-directed RNA polymerases I, II, and III subunit RPABC5: J
DNA-directed RNA polymerase II subunit RPB11: K
DNA-directed RNA polymerases I, II, and III subunit RPABC4: L
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
C
A
D
B
E
C
F
E
G
F
H
H
I
I
J
J
K
K
L
L

DNA-directed RNA polymerase II subunit RPB1

DNA-directed RNA polymerase II subunit RPB2

DNA-directed RNA polymerase II subunit RPB3

DNA-directed RNA polymerases I, II, and III subunit RPABC1

DNA-directed RNA polymerases I, II, and III subunit RPABC2

DNA-directed RNA polymerases I, II, and III subunit RPABC3

DNA-directed RNA polymerase II subunit RPB9

DNA-directed RNA polymerases I, II, and III subunit RPABC5

DNA-directed RNA polymerase II subunit RPB11

DNA-directed RNA polymerases I, II, and III subunit RPABC4

Related Entries With Identical Sequence

1dzf.1 | 1i3q.1 | 1i50.1 | 1i50.2 | 1i6h.1 | 1k83.1 | 1nik.1 | 1r5u.1 | 1r9s.1 | 1r9t.1 | 1sfo.1 | 1twa.1 | 1twc.1 | 1twf.1 | 1twf.2 | 1twg.1 | 1twg.2 | 1twg.3 | 1twh.1 | 1wcm.1 | 1y1v.1 | 1y1w.1 | 1y77.1 | 2b63.1 | 2b8k.1 | 2e2h.1 | 2e2i.1 | 2e2j.1 | 2ja5.1 | 2ja6.1  more...