SMTL ID : 6f41.1

RNA Polymerase III initially transcribing complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 4.30 Å

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

1 x G- U- U- G- C- C: RNA(Non-covalent)

G-U-U-G-C-C.1: 14 residues within 4Å: Chain B: H.456, E.504, E.506, A.704, M.705, Q.708, H.1029 Chain V: G.26, G.27, C.28, A.29, A.30, C.31, C.32 Protein-ligand interaction information (PLIP) not available

7 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.67, T.69, C.70, H.80 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.67, A:C.70, A:H.80 ZN.3: 4 residues within 4Å: Chain A: C.107, C.110, C.154, C.157 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.107, A:C.110, A:C.154, A:C.157 ZN.4: 5 residues within 4Å: Chain B: C.1095, K.1097, C.1098, C.1107, C.1110 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:C.1095, B:K.1097, B:C.1098, B:C.1098, B:C.1107 ZN.5: 4 residues within 4Å: Chain I: C.5, C.8, C.26, C.29 4 PLIP interactions: 4 interactions with chain I Metal complexes: I:C.5, I:C.8, I:C.26, I:C.29 ZN.6: 4 residues within 4Å: Chain J: C.7, C.10, C.45, C.46 4 PLIP interactions: 4 interactions with chain J Metal complexes: J:C.7, J:C.10, J:C.45, J:C.46 ZN.7: 5 residues within 4Å: Chain L: C.31, C.34, C.48, K.49, C.51 2 PLIP interactions: 2 interactions with chain L Metal complexes: L:C.31, L:C.48 ZN.8: 5 residues within 4Å: Chain S: C.4, N.6, C.7, C.25, C.28 4 PLIP interactions: 4 interactions with chain S Metal complexes: S:C.4, S:C.7, S:C.25, S:C.28

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vorlander, M.K. et al., Molecular mechanism of promoter opening by RNA polymerase III. Nature (2018)

Release Date

2018-01-17

Peptides

DNA-directed RNA polymerase III subunit RPC1: A
DNA-directed RNA polymerase III subunit RPC2: B
DNA-directed RNA polymerases I and III subunit RPAC1: C
DNA-directed RNA polymerase III subunit RPC9: D
DNA-directed RNA polymerases I, II, and III subunit RPABC1: E
DNA-directed RNA polymerases I, II, and III subunit RPABC2: F
DNA-directed RNA polymerase III subunit RPC8: G
DNA-directed RNA polymerases I, II, and III subunit RPABC3: H
DNA-directed RNA polymerase III subunit RPC10: I
DNA-directed RNA polymerases I, II, and III subunit RPABC5: J
DNA-directed RNA polymerases I and III subunit RPAC2: K
DNA-directed RNA polymerases I, II, and III subunit RPABC4: L
DNA-directed RNA polymerase III subunit RPC5: M
DNA-directed RNA polymerase III subunit RPC4: N
DNA-directed RNA polymerase III subunit RPC3: O
DNA-directed RNA polymerase III subunit RPC6: P
DNA-directed RNA polymerase III subunit RPC7: Q
TATA-box-binding protein: R
Transcription factor IIIB 70 kDa subunit: S
Transcription factor TFIIIB component B'': T

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
M

N
N

O
O

P
P

Q
Q

R
U

S
V

T
W

DNA-directed RNA polymerase III subunit RPC1

DNA-directed RNA polymerase III subunit RPC2

DNA-directed RNA polymerases I and III subunit RPAC1

DNA-directed RNA polymerase III subunit RPC9

DNA-directed RNA polymerases I, II, and III subunit RPABC1

DNA-directed RNA polymerases I, II, and III subunit RPABC2

DNA-directed RNA polymerase III subunit RPC8

DNA-directed RNA polymerases I, II, and III subunit RPABC3

DNA-directed RNA polymerase III subunit RPC10

DNA-directed RNA polymerases I, II, and III subunit RPABC5

DNA-directed RNA polymerases I and III subunit RPAC2

DNA-directed RNA polymerases I, II, and III subunit RPABC4

DNA-directed RNA polymerase III subunit RPC5

DNA-directed RNA polymerase III subunit RPC4

DNA-directed RNA polymerase III subunit RPC3

DNA-directed RNA polymerase III subunit RPC6

DNA-directed RNA polymerase III subunit RPC7

TATA-box-binding protein

Transcription factor IIIB 70 kDa subunit

Transcription factor TFIIIB component B''

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