SMTL ID : 1nik.1

Wild Type RNA Polymerase II

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 4.10 Å

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

7 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: M.108, C.110, C.148, C.167 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:C.110, A:C.167 ZN.2: 4 residues within 4Å: Chain A: C.67, C.70, C.77, H.80 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.67, A:C.70, A:H.80 ZN.3: 4 residues within 4Å: Chain B: C.1163, C.1166, C.1182, C.1185 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.1163, B:C.1166, B:C.1182, B:C.1185 ZN.4: 5 residues within 4Å: Chain C: C.86, C.88, H.91, C.92, C.95 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.86, C:C.88, C:C.92, C:C.95 ZN.5: 5 residues within 4Å: Chain I: C.7, C.10, C.29, T.31, C.32 4 PLIP interactions: 4 interactions with chain I Metal complexes: I:C.7, I:C.10, I:C.29, I:C.32 ZN.6: 5 residues within 4Å: Chain I: C.75, C.78, C.103, C.106, H.108 4 PLIP interactions: 4 interactions with chain I Metal complexes: I:C.75, I:C.78, I:C.103, I:C.106 ZN.7: 4 residues within 4Å: Chain J: C.7, C.10, C.45, C.46 4 PLIP interactions: 4 interactions with chain J Metal complexes: J:C.7, J:C.10, J:C.45, J:C.46

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bushnell, D.A. et al., Complete, 12-subunit RNA Polymerase II at 4.1-A resolution: implications for the initiation of transcription. Proc.Natl.Acad.Sci.USA (2003)

Release Date

2003-04-29

Peptides

RPB1: A
ORF YOR151c: B
DNA-directed RNA polymerase II, chain RPB3: C
DNA-directed RNA polymerase II, chain RPB4: D
DNA-directed RNA polymerase II, chain RPB5: E
DNA-directed RNA polymerase I, II and III 23 kDa polypeptide: F
DNA-directed RNA polymerase II, chain RPB7: G
DNA-directed RNA polymerase subunit RPB8: H
DNA-directed RNA polymerase II, chain RPB9: I
DNA-directed RNA polymerase II, chain RPB10: J
DNA-directed RNA polymerase II, chain RPB11: K
DNA-directed RNA polymerase II, chain RPB12: L

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

RPB1

ORF YOR151c

DNA-directed RNA polymerase II, chain RPB3

DNA-directed RNA polymerase II, chain RPB4

DNA-directed RNA polymerase II, chain RPB5

DNA-directed RNA polymerase I, II and III 23 kDa polypeptide

DNA-directed RNA polymerase II, chain RPB7

DNA-directed RNA polymerase subunit RPB8

DNA-directed RNA polymerase II, chain RPB9

DNA-directed RNA polymerase II, chain RPB10

DNA-directed RNA polymerase II, chain RPB11

DNA-directed RNA polymerase II, chain RPB12

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