SMTL ID : 4ym7.6 (5 other biounits)

RNA polymerase I structure with an alternative dimer hinge

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 5.50 Å

Oligo State

hetero-1-1-1-1-1-1-2-1-1-1-1-1-1-1-mer

Ligands

7 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.62, C.65, C.72, H.75 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.62, A:C.65, A:C.72, A:H.75 ZN.2: 4 residues within 4Å: Chain A: C.102, C.105, C.233, C.236 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.102, A:C.105, A:C.233, A:C.236 ZN.3: 4 residues within 4Å: Chain B: C.1104, C.1107, C.1128, C.1131 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.1104, B:C.1107, B:C.1128, B:C.1131 ZN.4: 4 residues within 4Å: Chain I: C.10, C.13, C.30, C.33 4 PLIP interactions: 4 interactions with chain I Metal complexes: I:C.10, I:C.13, I:C.30, I:C.33 ZN.5: 4 residues within 4Å: Chain I: C.86, C.89, C.114, C.117 4 PLIP interactions: 4 interactions with chain I Metal complexes: I:C.86, I:C.89, I:C.114, I:C.117 ZN.6: 5 residues within 4Å: Chain J: C.7, C.10, R.43, C.45, C.46 4 PLIP interactions: 4 interactions with chain J Metal complexes: J:C.7, J:C.10, J:C.45, J:C.46 ZN.7: 4 residues within 4Å: Chain L: C.31, C.34, C.48, C.51 4 PLIP interactions: 4 interactions with chain L Metal complexes: L:C.31, L:C.34, L:C.48, L:C.51

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kostrewa, D. et al., An alternative RNA polymerase I structure reveals a dimer hinge. Acta Crystallogr.,Sect.D (2015)

Release Date

2015-09-09

Peptides

DNA-directed RNA polymerase I subunit RPA190: A
DNA-directed RNA polymerase I subunit RPA135: B
DNA-directed RNA polymerases I and III subunit RPAC1: C
DNA-directed RNA polymerase I subunit RPA14: D
DNA-directed RNA polymerases I, II, and III subunit RPABC1: E
DNA-directed RNA polymerases I, II, and III subunit RPABC2: F
DNA-directed RNA polymerase I subunit RPA43: GO
DNA-directed RNA polymerases I, II, and III subunit RPABC3: H
DNA-directed RNA polymerase I subunit RPA12: I
DNA-directed RNA polymerases I, II, and III subunit RPABC5: J
DNA-directed RNA polymerases I and III subunit RPAC2: K
DNA-directed RNA polymerases I, II, and III subunit RPABC4: L
DNA-directed RNA polymerase I subunit RPA49: M
DNA-directed RNA polymerase I subunit RPA34: N

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
FA

B
FB

C
FC

D
FD

E
FE

F
FF

G
FG

O
FO

H
FH

I
FI

J
FJ

K
FK

L
FL

M
FM

N
FN

DNA-directed RNA polymerase I subunit RPA190

DNA-directed RNA polymerase I subunit RPA135

DNA-directed RNA polymerases I and III subunit RPAC1

DNA-directed RNA polymerase I subunit RPA14

DNA-directed RNA polymerases I, II, and III subunit RPABC1

DNA-directed RNA polymerases I, II, and III subunit RPABC2

DNA-directed RNA polymerase I subunit RPA43

DNA-directed RNA polymerases I, II, and III subunit RPABC3

DNA-directed RNA polymerase I subunit RPA12

DNA-directed RNA polymerases I, II, and III subunit RPABC5

DNA-directed RNA polymerases I and III subunit RPAC2

DNA-directed RNA polymerases I, II, and III subunit RPABC4

DNA-directed RNA polymerase I subunit RPA49

DNA-directed RNA polymerase I subunit RPA34

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