SMTL ID : 6rui.1

RNA Polymerase I Pre-initiation complex DNA opening intermediate 2

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 3 residues within 4Å: Chain R: T.12, C.29, H.33 2 PLIP interactions: 2 interactions with chain R Metal complexes: R:T.12, R:C.29

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sadian, Y. et al., Molecular insight into RNA polymerase I promoter recognition and promoter melting. Nat Commun (2019)

Release Date

2019-12-11

Peptides

DNA-directed RNA polymerase I subunit RPA12: C
DNA-directed RNA polymerase I subunit RPA34: D
DNA-directed RNA polymerase I subunit RPA49: E
DNA-directed RNA polymerase I subunit RPA190: F
DNA-directed RNA polymerase I subunit RPA135: G
DNA-directed RNA polymerases I and III subunit RPAC1: H
DNA-directed RNA polymerase I subunit RPA14: I
DNA-directed RNA polymerases I, II, and III subunit RPABC1: J
DNA-directed RNA polymerases I, II, and III subunit RPABC2: K
DNA-directed RNA polymerase I subunit RPA43: L
DNA-directed RNA polymerases I, II, and III subunit RPABC3: M
DNA-directed RNA polymerases I, II, and III subunit RPABC5: N
DNA-directed RNA polymerases I and III subunit RPAC2: O
DNA-directed RNA polymerases I, II, and III subunit RPABC4: P
RNA polymerase I-specific transcription initiation factor RRN3: Q
RNA polymerase I-specific transcription initiation factor RRN7: R
RNA polymerase I-specific transcription initiation factor RRN6: S
RNA polymerase I-specific transcription initiation factor RRN11: T

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
I

D
N

E
M

F
A

G
B

H
C

I
D

J
E

K
F

L
G

M
H

N
J

O
K

P
L

Q
O

R
Q

S
S

T
R

DNA-directed RNA polymerase I subunit RPA12

DNA-directed RNA polymerase I subunit RPA34

DNA-directed RNA polymerase I subunit RPA49

DNA-directed RNA polymerase I subunit RPA190

DNA-directed RNA polymerase I subunit RPA135

DNA-directed RNA polymerases I and III subunit RPAC1

DNA-directed RNA polymerase I subunit RPA14

DNA-directed RNA polymerases I, II, and III subunit RPABC1

DNA-directed RNA polymerases I, II, and III subunit RPABC2

DNA-directed RNA polymerase I subunit RPA43

DNA-directed RNA polymerases I, II, and III subunit RPABC3

DNA-directed RNA polymerases I, II, and III subunit RPABC5

DNA-directed RNA polymerases I and III subunit RPAC2

DNA-directed RNA polymerases I, II, and III subunit RPABC4

RNA polymerase I-specific transcription initiation factor RRN3

RNA polymerase I-specific transcription initiation factor RRN7

RNA polymerase I-specific transcription initiation factor RRN6

RNA polymerase I-specific transcription initiation factor RRN11

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