SMTL ID : 5fj8.1

Cryo-EM structure of yeast RNA polymerase III elongation complex at 3. 9 A

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 3.90 Å

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

1 x A- G- A- C- C- A- G- G- C: TEMPLATE DNA(Non-covalent)

A-G-A-C-C-A-G-G-C.1: 16 residues within 4Å: Chain A: Q.275, R.476, D.515 Chain B: E.504, Q.708, K.911, K.919, R.1056 Chain R: G.16, C.17, C.18, T.19, G.20, G.21, T.22, C.23 No protein-ligand interaction detected (PLIP)

6 x ZN: ZINC ION(Non-covalent)

ZN.2: 5 residues within 4Å: Chain A: C.67, T.69, C.70, C.77, H.80 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.67, A:C.70, A:C.77, A:H.80 ZN.3: 5 residues within 4Å: Chain A: C.107, N.109, C.110, C.154, C.157 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.107, A:C.110, A:C.154, A:C.157 ZN.4: 5 residues within 4Å: Chain B: C.1095, K.1097, C.1098, C.1107, C.1110 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:C.1098, B:C.1107, B:C.1110 ZN.5: 4 residues within 4Å: Chain I: C.5, C.8, C.26, C.29 3 PLIP interactions: 3 interactions with chain I Metal complexes: I:C.5, I:C.8, I:C.26 ZN.6: 5 residues within 4Å: Chain J: C.7, S.9, C.10, C.45, C.46 3 PLIP interactions: 3 interactions with chain J Metal complexes: J:C.7, J:C.10, J:C.45 ZN.7: 5 residues within 4Å: Chain L: C.31, C.34, C.48, K.49, C.51 4 PLIP interactions: 4 interactions with chain L Metal complexes: L:C.31, L:C.34, L:C.48, L:C.51

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hoffmann, N.A. et al., Molecular Structures of Unbound and Transcribing RNA Polymerase III. Nature (2015)

Release Date

2015-11-25

Peptides

DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC1: A
DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC2: B
DNA-DIRECTED RNA POLYMERASES I AND III SUBUNIT RPAC1: C
DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC9: D
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1: E
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2: F
DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC8: G
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3: H
DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC10: I
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5: J
DNA-DIRECTED RNA POLYMERASES I AND III SUBUNIT RPAC2: K
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4: L
DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC5: M
DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC4: N
DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC3: O
DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC6: P
DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC7: Q

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
M

N
N

O
O

P
P

Q
Q

DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC1

DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC2

DNA-DIRECTED RNA POLYMERASES I AND III SUBUNIT RPAC1

DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC9

DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1

DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2

DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC8

DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3

DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC10

DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5

DNA-DIRECTED RNA POLYMERASES I AND III SUBUNIT RPAC2

DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4

DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC5

DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC4

DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC3

DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC6

DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC7

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