SMTL ID : 2ja8.1

CPD lesion containing RNA Polymerase II elongation complex D

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.80 Å

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: D.481, D.483, D.485 Chain N: A.10 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.481, A:D.481, A:D.483, A:D.483, A:D.485

8 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain J: C.7, C.10, C.45, C.46 4 PLIP interactions: 4 interactions with chain J Metal complexes: J:C.7, J:C.10, J:C.45, J:C.46 ZN.3: 4 residues within 4Å: Chain L: C.31, C.34, C.48, C.51 5 PLIP interactions: 5 interactions with chain L Metal complexes: L:C.31, L:C.34, L:C.48, L:C.51, L:C.51 ZN.4: 4 residues within 4Å: Chain I: C.7, C.10, C.29, C.32 4 PLIP interactions: 4 interactions with chain I Metal complexes: I:C.7, I:C.10, I:C.29, I:C.32 ZN.5: 5 residues within 4Å: Chain I: C.75, C.78, C.103, C.106, H.108 1 PLIP interactions: 1 interactions with chain I Metal complexes: I:C.106 ZN.6: 5 residues within 4Å: Chain C: C.86, C.88, H.91, C.92, C.95 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.86, C:C.88, C:C.92, C:C.95 ZN.7: 4 residues within 4Å: Chain B: C.1163, C.1166, C.1182, C.1185 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.1163, B:C.1166, B:C.1182, B:C.1185 ZN.8: 4 residues within 4Å: Chain A: M.108, C.110, C.148, C.167 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.110, A:C.148, A:C.167 ZN.9: 4 residues within 4Å: Chain A: C.67, C.70, C.77, H.80 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.67, A:C.70, A:C.77, A:H.80

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brueckner, F. et al., Cpd Damage Recognition by Transcribing RNA Polymerase II. Science (2007)

Release Date

2007-02-20

Peptides

DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT: A
DNA-DIRECTED RNA POLYMERASE II 140 KDA POLYPEPTIDE: B
DNA-DIRECTED RNA POLYMERASE II 45KDA POLYPEPTIDE: C
DNA-DIRECTED RNA POLYMERASE II 32KDA POLYPEPTIDE: D
DNA-DIRECTED RNA POLYMERASES I, II, AND III 27 KDA POLYPEPTIDE: E
DNA-DIRECTED RNA POLYMERASES I, II, AND III 23 KDA POLYPEPTIDE: F
DNA-DIRECTED RNA POLYMERASE II 19KDA POLYPEPTIDE: G
DNA-DIRECTED RNA POLYMERASES I, II, AND III 14.5 KDA POLYPEPTIDE: H
DNA-DIRECTED RNA POLYMERASE II SUBUNIT 9: I
DNA-DIRECTED RNA POLYMERASES I/II/III SUBUNIT 10: J
DNA-DIRECTED RNA POLYMERASE II 13.6 KDA POLYPEPTIDE: K
DNA-DIRECTED RNA POLYMERASES I, II, AND III 7.7 KDA POLYPEPTIDE: L

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT

DNA-DIRECTED RNA POLYMERASE II 140 KDA POLYPEPTIDE

DNA-DIRECTED RNA POLYMERASE II 45KDA POLYPEPTIDE

DNA-DIRECTED RNA POLYMERASE II 32KDA POLYPEPTIDE

DNA-DIRECTED RNA POLYMERASES I, II, AND III 27 KDA POLYPEPTIDE

DNA-DIRECTED RNA POLYMERASES I, II, AND III 23 KDA POLYPEPTIDE

DNA-DIRECTED RNA POLYMERASE II 19KDA POLYPEPTIDE

DNA-DIRECTED RNA POLYMERASES I, II, AND III 14.5 KDA POLYPEPTIDE

DNA-DIRECTED RNA POLYMERASE II SUBUNIT 9

DNA-DIRECTED RNA POLYMERASES I/II/III SUBUNIT 10

DNA-DIRECTED RNA POLYMERASE II 13.6 KDA POLYPEPTIDE

DNA-DIRECTED RNA POLYMERASES I, II, AND III 7.7 KDA POLYPEPTIDE

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