SMTL ID : 1sfo.1

RNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.61 Å

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-mer

Ligands

8 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain C: C.107, M.108, C.110, C.148, C.167 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:C.107, C:C.148 ZN.2: 5 residues within 4Å: Chain C: C.67, Q.68, C.70, C.77, H.80 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:C.70, C:C.77 ZN.4: 5 residues within 4Å: Chain D: C.1163, C.1166, T.1170, C.1182, C.1185 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:C.1163, D:C.1166, D:C.1182 ZN.5: 5 residues within 4Å: Chain E: C.86, C.88, H.91, C.92, C.95 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:C.86, E:C.88, E:C.92, E:C.95 ZN.6: 6 residues within 4Å: Chain I: C.7, R.8, D.9, C.10, N.11, C.29 3 PLIP interactions: 3 interactions with chain I Metal complexes: I:C.7, I:R.8, I:C.10 ZN.7: 6 residues within 4Å: Chain I: C.75, C.78, H.79, S.80, C.103, C.106 5 PLIP interactions: 5 interactions with chain I Metal complexes: I:C.75, I:C.78, I:C.78, I:S.80, I:C.103 ZN.8: 5 residues within 4Å: Chain J: C.7, S.9, C.10, C.45, C.46 4 PLIP interactions: 4 interactions with chain J Metal complexes: J:C.7, J:C.10, J:C.45, J:C.46 ZN.9: 4 residues within 4Å: Chain L: C.31, C.34, C.48, C.51 2 PLIP interactions: 2 interactions with chain L Metal complexes: L:C.34, L:C.51

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 4 residues within 4Å: Chain A: A.10 Chain C: D.481, D.483, D.485 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:D.481, C:D.483, C:D.483, C:D.485

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Westover, K.D. et al., Structural Basis of Transcription: Separation of RNA from DNA by RNA Polymerase II. Science (2004)

Release Date

2004-03-02

Peptides

DNA-directed RNA polymerase II largest subunit: C
DNA-directed RNA polymerase II 140 kDa polypeptide: D
DNA-directed RNA polymerase II 45 kDa polypeptide: E
DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide: F
DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide: G
DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide: H
DNA-directed RNA polymerase II 14.2 kDa polypeptide: I
DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide: J
DNA-directed RNA polymerase II 13.6 kDa polypeptide: K
DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide: L

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
A

D
B

E
C

F
E

G
F

H
H

I
I

J
J

K
K

L
L

DNA-directed RNA polymerase II largest subunit

DNA-directed RNA polymerase II 140 kDa polypeptide

DNA-directed RNA polymerase II 45 kDa polypeptide

DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide

DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide

DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide

DNA-directed RNA polymerase II 14.2 kDa polypeptide

DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide

DNA-directed RNA polymerase II 13.6 kDa polypeptide

DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide

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