SMTL ID : 2ja7.2 (1 other biounit)

CPD lesion containing RNA Polymerase II elongation complex C

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.80 Å

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

8 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain D: C.107, M.108, C.110, C.148, C.167 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:C.110, D:C.148, D:C.167 ZN.2: 4 residues within 4Å: Chain D: C.67, C.70, C.77, H.80 5 PLIP interactions: 5 interactions with chain D Metal complexes: D:C.67, D:C.67, D:C.70, D:C.77, D:H.80 ZN.4: 4 residues within 4Å: Chain E: C.1163, C.1166, C.1182, C.1185 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:C.1163, E:C.1166, E:C.1182, E:C.1185 ZN.5: 5 residues within 4Å: Chain F: C.86, C.88, H.91, C.92, C.95 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:C.86, F:C.88, F:C.92, F:C.95 ZN.6: 4 residues within 4Å: Chain L: C.7, C.10, C.29, C.32 4 PLIP interactions: 4 interactions with chain L Metal complexes: L:C.7, L:C.10, L:C.29, L:C.32 ZN.7: 5 residues within 4Å: Chain L: C.75, C.78, C.103, C.106, H.108 1 PLIP interactions: 1 interactions with chain L Metal complexes: L:C.106 ZN.8: 4 residues within 4Å: Chain M: C.7, C.10, C.45, C.46 4 PLIP interactions: 4 interactions with chain M Metal complexes: M:C.7, M:C.10, M:C.45, M:C.46 ZN.9: 4 residues within 4Å: Chain O: C.31, C.34, C.48, C.51 4 PLIP interactions: 4 interactions with chain O Metal complexes: O:C.31, O:C.34, O:C.48, O:C.51

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 4 residues within 4Å: Chain C: A.11 Chain D: D.481, D.483, D.485 5 PLIP interactions: 5 interactions with chain D Metal complexes: D:D.481, D:D.481, D:D.483, D:D.483, D:D.485

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brueckner, F. et al., Cpd Damage Recognition by Transcribing RNA Polymerase II. Science (2007)

Release Date

2007-02-20

Peptides

DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT: D
DNA-DIRECTED RNA POLYMERASE II 140 KDA POLYPEPTIDE: E
DNA-DIRECTED RNA POLYMERASE II 45KDA POLYPEPTIDE: F
DNA-DIRECTED RNA POLYMERASE II 32KDA POLYPEPTIDE: G
DNA-DIRECTED RNA POLYMERASES I, II, AND III 27 KDA POLYPEPTIDE: H
DNA-DIRECTED RNA POLYMERASES I, II, AND III 23 KDA POLYPEPTIDE: I
DNA-DIRECTED RNA POLYMERASE II 19KDA POLYPEPTIDE: J
DNA-DIRECTED RNA POLYMERASES I, II, AND III 14.5 KDA POLYPEPTIDE: K
DNA-DIRECTED RNA POLYMERASE II SUBUNIT 9: L
DNA-DIRECTED RNA POLYMERASES I/II/III SUBUNIT 10: M
DNA-DIRECTED RNA POLYMERASE II 13.6 KDA POLYPEPTIDE: N
DNA-DIRECTED RNA POLYMERASES I, II, AND III 7.7 KDA POLYPEPTIDE: O

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

D
M

E
N

F
O

G
P

H
Q

I
R

J
S

K
T

L
U

M
V

N
W

O
X

DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT

DNA-DIRECTED RNA POLYMERASE II 140 KDA POLYPEPTIDE

DNA-DIRECTED RNA POLYMERASE II 45KDA POLYPEPTIDE

DNA-DIRECTED RNA POLYMERASE II 32KDA POLYPEPTIDE

DNA-DIRECTED RNA POLYMERASES I, II, AND III 27 KDA POLYPEPTIDE

DNA-DIRECTED RNA POLYMERASES I, II, AND III 23 KDA POLYPEPTIDE

DNA-DIRECTED RNA POLYMERASE II 19KDA POLYPEPTIDE

DNA-DIRECTED RNA POLYMERASES I, II, AND III 14.5 KDA POLYPEPTIDE

DNA-DIRECTED RNA POLYMERASE II SUBUNIT 9

DNA-DIRECTED RNA POLYMERASES I/II/III SUBUNIT 10

DNA-DIRECTED RNA POLYMERASE II 13.6 KDA POLYPEPTIDE

DNA-DIRECTED RNA POLYMERASES I, II, AND III 7.7 KDA POLYPEPTIDE

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