SMTL ID : 8tvq.1

Cryo-EM structure of CPD stalled 10-subunit Pol II in complex with Rad26

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

8 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: C.107, M.108, H.109, C.110, C.148, C.167 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.107, A:M.108, A:C.110, A:C.167 ZN.2: 6 residues within 4Å: Chain A: C.67, Q.68, C.70, C.77, P.78, H.80 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.67, A:C.77, A:H.80 ZN.4: 5 residues within 4Å: Chain B: C.1163, I.1165, C.1166, C.1182, C.1185 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:C.1163, B:C.1166, B:C.1185 ZN.5: 8 residues within 4Å: Chain C: C.86, C.88, H.91, C.92, D.93, K.94, C.95, S.96 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:C.92, C:C.92, C:C.95 ZN.6: 3 residues within 4Å: Chain G: C.10, T.31, C.32 1 PLIP interactions: 1 interactions with chain G Metal complexes: G:T.31 ZN.7: 6 residues within 4Å: Chain G: C.75, C.78, C.103, S.105, C.106, S.107 3 PLIP interactions: 3 interactions with chain G Metal complexes: G:C.103, G:S.105, G:C.106 ZN.8: 6 residues within 4Å: Chain H: C.7, S.9, C.10, R.43, C.45, C.46 2 PLIP interactions: 2 interactions with chain H Metal complexes: H:C.7, H:C.45 ZN.9: 6 residues within 4Å: Chain J: C.31, A.32, E.33, C.34, C.48, C.51 5 PLIP interactions: 5 interactions with chain J Metal complexes: J:C.31, J:C.31, J:A.32, J:C.34, J:C.51

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 3 residues within 4Å: Chain A: D.483, D.485 Chain N: A.10 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.483, A:D.483, A:D.485

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sarsam, R.D. et al., Elf1 promotes Rad26's interaction with lesion-arrested Pol II for transcription-coupled repair. Proc.Natl.Acad.Sci.USA (2024)

Release Date

2024-01-24

Peptides

DNA-directed RNA polymerase II subunit RPB1: A
DNA-directed RNA polymerase subunit beta: B
DNA-directed RNA polymerase II subunit RPB3: C
DNA-directed RNA polymerases I, II, and III subunit RPABC1: D
DNA-directed RNA polymerases I, II, and III subunit RPABC2: E
DNA-directed RNA polymerases I, II, and III subunit RPABC3: F
DNA-directed RNA polymerase II subunit RPB9: G
DNA-directed RNA polymerases II subunit RPABC5: H
DNA-directed RNA polymerase II subunit RPB11: I
DNA-directed RNA polymerases II subunit RPABC4: J
DNA repair and recombination protein RAD26: K

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
E

E
F

F
H

G
I

H
J

I
K

J
L

K
M

DNA-directed RNA polymerase II subunit RPB1

DNA-directed RNA polymerase subunit beta

DNA-directed RNA polymerase II subunit RPB3

DNA-directed RNA polymerases I, II, and III subunit RPABC1

DNA-directed RNA polymerases I, II, and III subunit RPABC2

DNA-directed RNA polymerases I, II, and III subunit RPABC3

DNA-directed RNA polymerase II subunit RPB9

DNA-directed RNA polymerases II subunit RPABC5

DNA-directed RNA polymerase II subunit RPB11

DNA-directed RNA polymerases II subunit RPABC4

DNA repair and recombination protein RAD26

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