SMTL ID : 2b8k.1

12-subunit RNA Polymerase II

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 4.15 Å

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

8 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: M.108, C.110, C.148, C.167 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:C.148, A:C.167 ZN.2: 5 residues within 4Å: Chain A: C.67, Q.68, C.70, C.77, H.80 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:C.67, A:H.80 ZN.3: 5 residues within 4Å: Chain B: C.1163, C.1166, T.1170, C.1182, C.1185 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:C.1166, B:C.1166, B:C.1185 ZN.4: 4 residues within 4Å: Chain C: C.86, C.88, C.92, C.95 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:C.86, C:C.88, C:C.92 ZN.5: 4 residues within 4Å: Chain I: C.7, C.10, C.29, C.32 3 PLIP interactions: 3 interactions with chain I Metal complexes: I:C.10, I:C.29, I:C.32 ZN.6: 4 residues within 4Å: Chain I: C.75, C.78, C.106, H.108 1 PLIP interactions: 1 interactions with chain I Metal complexes: I:C.106 ZN.7: 4 residues within 4Å: Chain J: C.7, C.10, C.45, C.46 4 PLIP interactions: 4 interactions with chain J Metal complexes: J:C.7, J:C.10, J:C.45, J:C.46 ZN.8: 4 residues within 4Å: Chain L: C.31, C.34, C.48, C.51 4 PLIP interactions: 4 interactions with chain L Metal complexes: L:C.31, L:C.34, L:C.48, L:C.51

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Meyer, P.A. et al., Phasing RNA Polymerase II Using Intrinsically Bound Zn Atoms: An Updated Structural Model. Structure (2006)

Release Date

2006-06-20

Peptides

DNA-directed RNA polymerase II largest subunit: A
DNA-directed RNA polymerase II 140 kDa polypeptide: B
DNA-directed RNA polymerase II 45 kDa polypeptide: C
DNA-directed RNA polymerase II 32 kDa polypeptide: D
DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide: E
DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide: F
DNA-directed RNA polymerase II 19 kDa polypeptide: G
DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide: H
DNA-directed RNA polymerase II subunit 9: I
DNA-directed RNA polymerases I/II/III subunit 10: J
DNA-directed RNA polymerase II 13.6 kDa polypeptide: K
DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide: L

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

DNA-directed RNA polymerase II largest subunit

DNA-directed RNA polymerase II 140 kDa polypeptide

DNA-directed RNA polymerase II 45 kDa polypeptide

DNA-directed RNA polymerase II 32 kDa polypeptide

DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide

DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide

DNA-directed RNA polymerase II 19 kDa polypeptide

DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide

DNA-directed RNA polymerase II subunit 9

DNA-directed RNA polymerases I/II/III subunit 10

DNA-directed RNA polymerase II 13.6 kDa polypeptide

DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide

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