SMTL ID : 4bxz.1

RNA Polymerase II-Bye1 complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 4.80 Å

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

8 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: C.107, H.109, C.110, G.166, C.167 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.107, A:C.110, A:C.167 ZN.2: 5 residues within 4Å: Chain A: C.67, C.70, Q.71, C.77, H.80 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:C.67 ZN.4: 4 residues within 4Å: Chain B: C.1163, C.1166, C.1182, C.1185 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:C.1163, B:C.1166, B:C.1185 ZN.5: 5 residues within 4Å: Chain C: C.86, C.88, C.92, K.94, C.95 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.86, C:C.88, C:C.92, C:C.95 ZN.6: 5 residues within 4Å: Chain I: C.7, C.10, C.29, T.31, C.32 4 PLIP interactions: 4 interactions with chain I Metal complexes: I:C.7, I:C.10, I:C.29, I:C.32 ZN.7: 5 residues within 4Å: Chain I: C.75, C.78, C.103, C.106, H.108 3 PLIP interactions: 3 interactions with chain I Metal complexes: I:C.75, I:C.78, I:C.106 ZN.8: 4 residues within 4Å: Chain J: C.7, C.10, C.45, C.46 3 PLIP interactions: 3 interactions with chain J Metal complexes: J:C.7, J:C.10, J:C.45 ZN.9: 5 residues within 4Å: Chain L: C.31, C.34, S.36, C.48, C.51 4 PLIP interactions: 4 interactions with chain L Metal complexes: L:C.31, L:C.34, L:C.48, L:C.51

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 1 residues within 4Å: Chain A: D.481 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kinkelin, K. et al., Structures of RNA Polymerase II Complexes with Bye1, a Chromatin-Binding Phf3/Dido1 Homologue. Proc.Natl.Acad.Sci.USA (2013)

Release Date

2013-09-11

Peptides

DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1: A
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2: B
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3: C
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4: D
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1: E
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2: F
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7: G
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3: H
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9: I
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5: J
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11: K
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4: L
TRANSCRIPTION FACTOR BYE1: M

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
X

DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1

DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2

DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3

DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4

DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1

DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2

DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7

DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3

DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9

DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5

DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11

DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4

TRANSCRIPTION FACTOR BYE1

Related Entries With Identical Sequence