SMTL ID : 4c2m.2 (1 other biounit)

Structure of RNA polymerase I at 2.8 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

hetero-oligomer

Ligands

7 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.31, C.34, C.48, C.51 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.31, A:C.34, A:C.48, A:C.51 ZN.2: 5 residues within 4Å: Chain E: C.62, C.65, C.72, P.73, H.75 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:C.62, E:C.65, E:C.72, E:H.75 ZN.3: 4 residues within 4Å: Chain E: C.102, C.105, C.233, C.236 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:C.102, E:C.105, E:C.233, E:C.236 ZN.5: 4 residues within 4Å: Chain F: C.1104, C.1107, C.1128, C.1131 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:C.1104, F:C.1107, F:C.1128, F:C.1131 ZN.6: 4 residues within 4Å: Chain M: C.10, C.13, C.30, C.33 4 PLIP interactions: 4 interactions with chain M Metal complexes: M:C.10, M:C.13, M:C.30, M:C.33 ZN.7: 4 residues within 4Å: Chain M: C.86, C.89, C.114, C.117 4 PLIP interactions: 4 interactions with chain M Metal complexes: M:C.86, M:C.89, M:C.114, M:C.117 ZN.8: 4 residues within 4Å: Chain N: C.7, C.10, C.45, C.46 5 PLIP interactions: 5 interactions with chain N Metal complexes: N:C.7, N:C.10, N:C.45, N:C.45, N:C.46

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 8 residues within 4Å: Chain F: S.498, R.501, H.532, H.544, F.545, S.698, I.699, L.700 3 PLIP interactions: 3 interactions with chain F Hydrogen bonds: F:I.699, F:L.700 Salt bridges: F:H.532

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Engel, C. et al., RNA Polymerase I Structure and Transcription Regulation. Nature (2013)

Release Date

2013-10-23

Peptides

DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4: A
DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA49: B
DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA34: C
DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA43: DK
DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA190: E
DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA135: F
DNA-DIRECTED RNA POLYMERASES I AND III SUBUNIT RPAC1: G
DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA14: H
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1: I
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2: J
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3: L
DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA12: M
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5: N
DNA-DIRECTED RNA POLYMERASES I AND III SUBUNIT RPAC2: O

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
1

B
2

C
3

D
4

K
V

E
P

F
Q

G
R

H
S

I
T

J
U

L
W

M
X

N
Y

O
Z

DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4

DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA49

DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA34

DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA43

DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA190

DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA135

DNA-DIRECTED RNA POLYMERASES I AND III SUBUNIT RPAC1

DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA14

DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1

DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2

DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3

DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA12

DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5

DNA-DIRECTED RNA POLYMERASES I AND III SUBUNIT RPAC2

Related Entries With Identical Sequence