SMTL ID : 8tvs.1

Cryo-EM structure of backtracked Pol II in complex with Rad26

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

8 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: C.107, M.108, H.109, C.110, G.111, C.167 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.107, A:M.108, A:C.167 ZN.2: 5 residues within 4Å: Chain A: C.67, Q.68, C.70, C.77, H.80 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.67, A:C.70, A:C.77, A:H.80 ZN.4: 5 residues within 4Å: Chain B: C.1163, C.1166, T.1170, C.1182, C.1185 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:C.1163, B:C.1182, B:C.1185 ZN.5: 7 residues within 4Å: Chain C: C.86, C.88, C.92, D.93, K.94, C.95, S.96 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:C.92, C:C.95 ZN.6: 4 residues within 4Å: Chain I: C.7, C.10, T.31, C.32 1 PLIP interactions: 1 interactions with chain I Metal complexes: I:T.31 ZN.7: 4 residues within 4Å: Chain I: C.78, C.103, S.105, C.106 3 PLIP interactions: 3 interactions with chain I Metal complexes: I:C.103, I:S.105, I:C.106 ZN.8: 6 residues within 4Å: Chain J: C.7, S.9, C.10, R.43, C.45, C.46 4 PLIP interactions: 4 interactions with chain J Metal complexes: J:C.10, J:C.45, J:C.45, J:C.46 ZN.9: 5 residues within 4Å: Chain L: C.31, A.32, E.33, C.34, C.51 4 PLIP interactions: 4 interactions with chain L Metal complexes: L:C.31, L:C.31, L:A.32, L:C.51

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 6 residues within 4Å: Chain A: R.446, D.481, D.483, D.485 Chain P: U.11, G.12 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.483, A:D.485, A:D.485

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sarsam, R.D. et al., Elf1 promotes Rad26's interaction with lesion-arrested Pol II for transcription-coupled repair. Proc.Natl.Acad.Sci.USA (2024)

Release Date

2024-01-24

Peptides

DNA-directed RNA polymerase subunit: A
DNA-directed RNA polymerase subunit beta: B
DNA-directed RNA polymerase II subunit RPB3: C
DNA-directed RNA polymerase II subunit RPB4: D
DNA-directed RNA polymerases I, II, and III subunit RPABC1: E
DNA-directed RNA polymerases I, II, and III subunit RPABC2: F
DNA-directed RNA polymerase II subunit RPB7: G
DNA-directed RNA polymerases I, II, and III subunit RPABC3: H
DNA-directed RNA polymerase II subunit RPB9: I
DNA-directed RNA polymerases II subunit RPABC5: J
DNA-directed RNA polymerase II subunit RPB11: K
DNA-directed RNA polymerases II subunit RPABC4: L
DNA repair and recombination protein RAD26: M

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
M

DNA-directed RNA polymerase subunit

DNA-directed RNA polymerase subunit beta

DNA-directed RNA polymerase II subunit RPB3

DNA-directed RNA polymerase II subunit RPB4

DNA-directed RNA polymerases I, II, and III subunit RPABC1

DNA-directed RNA polymerases I, II, and III subunit RPABC2

DNA-directed RNA polymerase II subunit RPB7

DNA-directed RNA polymerases I, II, and III subunit RPABC3

DNA-directed RNA polymerase II subunit RPB9

DNA-directed RNA polymerases II subunit RPABC5

DNA-directed RNA polymerase II subunit RPB11

DNA-directed RNA polymerases II subunit RPABC4

DNA repair and recombination protein RAD26

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