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SMTL ID : 3mxf.1

Crystal Structure of the first bromodomain of human BRD4 in complex with the inhibitor JQ1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x JQ1: (6S)-6-(2-tert-butoxy-2-oxoethyl)-4-(4-chlorophenyl)-2,3,9-trimethyl-6,7-dihydrothieno[3,2-f][1,2,4]triazolo[4,3-a][1,4]diazepin-10-ium(Non-covalent)

JQ1.1:

10 residues within 4Å:

Chain A: W.40, P.41, F.42, V.46, L.51, L.53, N.99, D.104, I.105, M.108

13 PLIP interactions:

13 interactions with chain A

Hydrophobic interactions: A:W.40, A:W.40, A:P.41, A:F.42, A:V.46, A:L.51, A:L.53, A:L.53, A:D.104, A:I.105, A:I.105
Hydrogen bonds: A:N.99, A:N.99

1 x IOD: IODIDE ION(Non-functional Binders)

IOD.2:

2 residues within 4Å:

Chain A: Q.23, Y.24

Ligand excluded by PLIP

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3:	5 residues within 4Å: Chain A: I.59, I.60, K.61, T.62, N.94 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:I.59, A:K.61, A:T.62, A:T.62, A:N.94
EDO.4:	4 residues within 4Å: Chain A: P.101, G.102, V.106, E.110 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.102 Water bridges: A:E.110
EDO.5:	5 residues within 4Å: Chain A: Y.96, N.99, K.100, P.101, V.106 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.99

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.6:

3 residues within 4Å:

Chain A: G.102, D.103, D.104

5 PLIP interactions:

5 interactions with chain A

Hydrogen bonds: A:D.104
Water bridges: A:D.104, A:I.105
Salt bridges: A:D.103, A:D.104

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Filippakopoulos, P. et al., Selective inhibition of BET bromodomains. Nature (2010)

Release Date

2010-10-06

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Bromodomain-containing protein 4

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