SMTL ID : 3p5o.1

Crystal Structure of the First Bromodomain of Human Brd4 in complex with IBET inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x EAM: 2-[(4S)-6-(4-chlorophenyl)-8-methoxy-1-methyl-4H-[1,2,4]triazolo[4,3-a][1,4]benzodiazepin-4-yl]-N-ethylacetamide(Non-covalent)

EAM.1: 11 residues within 4Å: Chain A: W.40, P.41, F.42, V.46, L.51, L.53, N.99, D.104, I.105, M.108 Ligands: EDO.2 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:W.40, A:W.40, A:P.41, A:P.41, A:F.42, A:V.46, A:L.51, A:L.53, A:I.105, A:I.105 Hydrogen bonds: A:N.99, A:N.99 Water bridges: A:Y.98

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 2 residues within 4Å: Chain A: W.40 Ligands: EAM.1 No protein-ligand interaction detected (PLIP) EDO.3: 3 residues within 4Å: Chain A: Q.82, I.85, L.123 1 PLIP interactions: 1 interactions with chain A Water bridges: A:Q.21 EDO.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) EDO.5: 5 residues within 4Å: Chain A: I.59, I.60, K.61, T.62, N.94 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:I.59, A:K.61, A:T.62, A:T.62, A:T.62

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nicodeme, E. et al., Suppression of inflammation by a synthetic histone mimic. Nature (2010)

Release Date

2010-11-17

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 4

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