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SMTL ID : 3pbz.1

Endothiapepsin in complex with a fragment

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.48 Å

Oligo State

monomer

Ligands

1 x F02: 4-(diethylamino)benzohydrazide(Non-covalent)

F02.1:

13 residues within 4Å:

Chain A: D.33, D.35, Y.79, D.81, S.83, S.115, F.116, D.119, I.122, L.125, D.219, G.221
Ligands: DMS.3

6 PLIP interactions:

6 interactions with chain A

Hydrophobic interactions: A:Y.79, A:F.116, A:I.122, A:L.125
Hydrogen bonds: A:D.35, A:D.219

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2:

6 residues within 4Å:

Chain A: V.272, P.274, Y.277, A.312, S.329, K.330

5 PLIP interactions:

5 interactions with chain A

Hydrogen bonds: A:Y.277, A:K.330, A:K.330
Water bridges: A:V.272, A:V.272

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3:	4 residues within 4Å: Chain A: G.221, T.222, T.223 Ligands: F02.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.223 Water bridges: A:L.224 Salt bridges: A:D.81
DMS.4:	2 residues within 4Å: Chain A: S.284, T.285 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.285, A:T.285

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Koster, H. et al., A small nonrule of 3 compatible fragment library provides high hit rate of endothiapepsin crystal structures with various fragment chemotypes. J.Med.Chem. (2011)

Release Date

2011-10-19

Peptides

Endothiapepsin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Endothiapepsin

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