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SMTL ID : 6ron.1

Endothiapepsin in complex with compound 046

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.15 Å

Oligo State

monomer

Ligands

1 x KCE: [(1~{S},2~{R})-1-[1-(1,3-benzodioxol-5-ylmethyl)-1,2,3,4-tetrazol-5-yl]-3-(4-~{tert}-butylphenyl)-2-methyl-propyl]diazane(Non-covalent)

KCE.1:

19 residues within 4Å:

Chain A: D.33, D.35, G.37, Y.79, G.80, D.81, S.83, S.115, F.116, D.119, I.122, L.125, D.219, G.221, T.222, Y.226, I.300, I.304
Ligands: DMS.3

14 PLIP interactions:

14 interactions with chain A

Hydrophobic interactions: A:Y.79, A:D.81, A:F.116, A:F.116, A:F.116, A:I.122, A:T.222, A:I.300, A:I.304
Hydrogen bonds: A:D.35, A:D.35, A:G.80, A:T.222
Water bridges: A:T.223

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2:

6 residues within 4Å:

Chain A: V.272, P.274, Y.277, A.312, S.329, K.330

5 PLIP interactions:

5 interactions with chain A

Hydrogen bonds: A:V.272, A:S.329, A:K.330, A:K.330
Water bridges: A:V.272

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3:	5 residues within 4Å: Chain A: G.221, T.222, T.223, L.224 Ligands: KCE.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.223 Water bridges: A:L.224 Salt bridges: A:D.81
DMS.4:	6 residues within 4Å: Chain A: I.10, D.11, E.118, D.119, S.120, T.121 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.120, A:T.121, A:T.121 Water bridges: A:S.120 Salt bridges: A:D.119

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Magari, F. et al., Endothiapepsin in complex with compound 046. To Be Published

Release Date

2020-07-08

Peptides

Endothiapepsin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Endothiapepsin

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