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SMTL ID : 6ron.1

Endothiapepsin in complex with compound 046

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.15 Å

Oligo State

monomer

Ligands

1 x KCE: [(1~{S},2~{R})-1-[1-(1,3-benzodioxol-5-ylmethyl)-1,2,3,4-tetrazol-5-yl]-3-(4-~{tert}-butylphenyl)-2-methyl-propyl]diazane(Non-covalent)

KCE.1:

19 residues within 4Å:

Chain A: D.33, D.35, G.37, Y.79, G.80, D.81, S.83, S.115, F.116, D.119, I.122, L.125, D.219, G.221, T.222, Y.226, I.300, I.304
Ligands: DMS.3

14 PLIP interactions:

14 interactions with chain A

Hydrophobic interactions: A:Y.79, A:D.81, A:F.116, A:F.116, A:F.116, A:I.122, A:T.222, A:I.300, A:I.304
Hydrogen bonds: A:D.35, A:D.35, A:G.80, A:T.222
Water bridges: A:T.223

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2:

6 residues within 4Å:

Chain A: V.272, P.274, Y.277, A.312, S.329, K.330

5 PLIP interactions:

5 interactions with chain A

Hydrogen bonds: A:V.272, A:S.329, A:K.330, A:K.330
Water bridges: A:V.272

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3:	5 residues within 4Å: Chain A: G.221, T.222, T.223, L.224 Ligands: KCE.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.223 Water bridges: A:L.224 Salt bridges: A:D.81
DMS.4:	6 residues within 4Å: Chain A: I.10, D.11, E.118, D.119, S.120, T.121 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.120, A:T.121, A:T.121 Water bridges: A:S.120 Salt bridges: A:D.119

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Magari, F. et al., Endothiapepsin in complex with compound 046. To Be Published

Release Date

2020-07-08

Peptides

Endothiapepsin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Endothiapepsin

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5j25.1 | 5lwr.1 | 5lws.1 | 5lwt.1 | 5lwu.1 | 5mb0.1 | 5mb3.1 | 5mb5.1 | 5mb6.1 | 5mb7.1 | 5og7.1 | 5oje.1 | 5oyq.1 | 5oyr.1 | 5oys.1 | 5oyt.1 | 5oyu.1 | 5oyv.1 | 5oyw.1 | 5oyx.1 | 5oyy.1 | 5oyz.1 | 5oz0.1 | 5oz1.1 | 5oz2.1 | 5oz3.1 | 5oz4.1 | 5oz5.1 | 5oz6.1 | 5oz7.1 | 5oz8.1 | 5oz9.1 | 5oza.1 | 5ozb.1 | 5ozc.1 | 5ozd.1 | 5oze.1 | 5ozf.1 | 5ozg.1 | 5ozh.1 | 5ozi.1 | 5ozj.1 | 5ozk.1 | 5ozl.1 | 5ozm.1 | 5ozn.1 | 5ozo.1 | 5ozp.1 | 5ozq.1 | 5ozr.1 | 5ozs.1 | 5ozt.1 | 5ozu.1 | 5ozv.1 | 5ozw.1 | 5ozx.1 | 5ozy.1 | 5ozz.1 | 5p00.1 | 5p01.1 | 5p02.1 | 5p03.1 | 5p04.1 | 5p05.1 | 5p06.1 | 5p07.1 | 5p08.1 | 5p09.1 | 5p0a.1 | 5p0b.1 | 5p0c.1 | 5p0d.1 | 5p0e.1 | 5p0f.1 | 5p0g.1 | 5p0h.1 | 5p0i.1 | 5p0j.1 | 5p0k.1 | 5p0l.1 | 5p0m.1 | 5p0n.1 | 5p0o.1 | 5p0p.1 | 5p0q.1 | 5p0r.1 | 5p0s.1 | 5p0t.1 | 5p0u.1 | 5p0v.1 | 5p0w.1 | 5p0x.1 | 5p0y.1 | 5p0z.1 | 5p10.1 | 5p11.1 | 5p12.1 | 5p13.1 | 5p14.1 | 5p15.1 | 5p16.1 | 5p17.1 | 5p18.1 | 5p19.1 | 5p1a.1 | 5p1b.1 | 5p1c.1 | 5p1d.1 | 5p1e.1 | 5p1f.1 | 5p1g.1 | 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