5isj.1 | SWISS-MODEL Template Library

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SMTL ID : 5isj.1

Endothiapepsin in complex with chiral chlorinated primary amine fragment

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1:

7 residues within 4Å:

Chain A: I.271, V.272, P.274, Y.277, A.312, S.329, K.330

5 PLIP interactions:

5 interactions with chain A

Hydrogen bonds: A:S.329, A:K.330
Water bridges: A:V.272, A:Y.277, A:Y.277

1 x 6LE: (1S)-2-amino-1-(4-chlorophenyl)ethan-1-ol(Non-covalent)

6LE.2:

14 residues within 4Å:

Chain A: D.35, G.37, S.38, Y.79, G.80, F.194, I.217, D.219, G.221, T.222, I.300, I.302, I.304
Ligands: DMS.6

6 PLIP interactions:

6 interactions with chain A

Hydrophobic interactions: A:F.194, A:I.217, A:I.304
Hydrogen bonds: A:D.35, A:G.80, A:T.222

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.3:	5 residues within 4Å: Chain A: C.255, D.279, G.281, P.282, C.290 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.279, A:G.281
ACT.4:	4 residues within 4Å: Chain A: T.6, P.166, G.167, T.168 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.168, A:T.168 Water bridges: A:T.6

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.5:

8 residues within 4Å:

Chain A: L.13, D.15, T.223, L.224, Y.226, F.280, I.283, F.291

1 PLIP interactions:

1 interactions with chain A

Water bridges: A:Y.226

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.6:

8 residues within 4Å:

Chain A: G.37, S.38, I.77, S.78, Y.79, L.133, F.194
Ligands: 6LE.2

No protein-ligand interaction detected (PLIP)

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Radeva, N. et al., Crystallographic Fragment Screening of an Entire Library. to be published

Release Date

2017-03-29

Peptides

Endothiapepsin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Endothiapepsin

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