5oje.1 | SWISS-MODEL Template Library

Modelling
Repository
Tools
Documentation
Log in
Create Account

SMTL ID : 5oje.1

Endothiapepsin with Ligand VSK-B24

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.58 Å

Oligo State

monomer

Ligands

1 x VSK: (2~{S})-2-azanyl-3-(1~{H}-indol-3-yl)-~{N}-[2-(2,4,6-trimethylphenyl)ethyl]propanamide(Non-covalent)

VSK.1:

17 residues within 4Å:

Chain A: D.33, D.35, G.37, Y.79, G.80, D.81, S.83, F.116, I.122, L.125, D.219, G.221, T.222, Y.226, I.300, I.304
Ligands: DMS.2

12 PLIP interactions:

12 interactions with chain A

Hydrophobic interactions: A:Y.79, A:D.81, A:F.116, A:L.125, A:I.300, A:I.300, A:I.304
Hydrogen bonds: A:D.81, A:D.219, A:T.222, A:T.222
Water bridges: A:G.80

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2:

7 residues within 4Å:

Chain A: D.15, A.16, D.81, G.221, T.222, T.223
Ligands: VSK.1

2 PLIP interactions:

2 interactions with chain A

Hydrogen bonds: A:T.223
Water bridges: A:L.224

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.3:

8 residues within 4Å:

Chain A: A.187, V.188, S.189, E.196, W.197, T.198, D.215, G.216

1 PLIP interactions:

1 interactions with chain A

Water bridges: A:V.188

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4:

7 residues within 4Å:

Chain A: V.232, S.233, W.236, A.237, A.242, K.243, Y.251

5 PLIP interactions:

5 interactions with chain A

Hydrogen bonds: A:S.233, A:W.236, A:Y.251, A:Y.251
Water bridges: A:S.233

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.5:

2 residues within 4Å:

Chain A: G.72, T.74

1 PLIP interactions:

1 interactions with chain A

Hydrogen bonds: A:G.72

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Jumde, V.R. et al., Design and Synthesis of Bioisosteres of Acylhydrazones as Stable Inhibitors of the Aspartic Protease Endothiapepsin. ChemMedChem (2018)

Release Date

2018-09-12

Peptides

Endothiapepsin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Endothiapepsin

Related Entries With Identical Sequence

1e5o.1 | 1e80.1 | 1e81.1 | 1e82.1 | 1eed.1 | 1ent.1 | 1epl.1 | 1epm.1 | 1epn.1 | 1epo.1 | 1epp.1 | 1epq.1 | 1epr.1 | 1er8.1 | 1od1.1 | 2er0.1 | 2er6.1 | 2er7.1 | 2er9.1 | 2v00.1 | 3er3.1 | 3er5.1 | 3lzy.1 | 3pb5.1 | 3pbd.1 | 3pbz.1 | 3pcw.1 | 3pcz.1 | 3pgi.1 | 3pi0.1 more...less...

3pld.1 | 3pll.1 | 3pm4.1 | 3pmu.1 | 3pmy.1 | 3prs.1 | 3psy.1 | 3pww.1 | 3q6y.1 | 3t6i.1 | 3t7p.1 | 3t7q.1 | 3t7x.1 | 3wz6.1 | 3wz7.1 | 3wz8.1 | 4ape.1 | 4er1.1 | 4er2.1 | 4er4.1 | 4kup.1 | 4l6b.1 | 4lap.1 | 4lbt.1 | 4lhh.1 | 4lp9.1 | 4y35.1 | 4y36.1 | 4y37.1 | 4y38.1 | 4y39.1 | 4y3a.1 | 4y3d.1 | 4y3e.1 | 4y3f.1 | 4y3g.1 | 4y3h.1 | 4y3j.1 | 4y3l.1 | 4y3m.1 | 4y3n.1 | 4y3p.1 | 4y3q.1 | 4y3r.1 | 4y3s.1 | 4y3t.1 | 4y3w.1 | 4y3x.1 | 4y3y.1 | 4y3z.1 | 4y41.1 | 4y43.1 | 4y44.1 | 4y45.1 | 4y47.1 | 4y48.1 | 4y4a.1 | 4y4b.1 | 4y4d.1 | 4y4e.1 | 4y4g.1 | 4y4j.1 | 4y4t.1 | 4y4u.1 | 4y4w.1 | 4y4x.1 | 4y4z.1 | 4y50.1 | 4y51.1 | 4y53.1 | 4y54.1 | 4y56.1 | 4y57.1 | 4y58.1 | 4y5a.1 | 4y5b.1 | 4y5c.1 | 4y5e.1 | 4y5g.1 | 4y5k.1 | 4y5l.1 | 4y5m.1 | 4y5n.1 | 4y5p.1 | 4yck.1 | 4yct.1 | 4ycy.1 | 4yd3.1 | 4yd4.1 | 4yd5.1 | 4yd6.1 | 4yd7.1 | 4ze6.1 | 4zea.1 | 5dpz.1 | 5dq1.1 | 5dq2.1 | 5dq4.1 | 5dq5.1 | 5dr0.1 | 5dr1.1 | 5dr3.1 | 5dr4.1 | 5dr7.1 | 5dr8.1 | 5er1.1 | 5er2.1 | 5hco.1 | 5is4.1 | 5isj.1 | 5isk.1 | 5j25.1 | 5lwr.1 | 5lws.1 | 5lwt.1 | 5lwu.1 | 5mb0.1 | 5mb3.1 | 5mb5.1 | 5mb6.1 | 5mb7.1 | 5og7.1 | 5oyq.1 | 5oyr.1 | 5oys.1 | 5oyt.1 | 5oyu.1 | 5oyv.1 | 5oyw.1 | 5oyx.1 | 5oyy.1 | 5oyz.1 | 5oz0.1 | 5oz1.1 | 5oz2.1 | 5oz3.1 | 5oz4.1 | 5oz5.1 | 5oz6.1 | 5oz7.1 | 5oz8.1 | 5oz9.1 | 5oza.1 | 5ozb.1 | 5ozc.1 | 5ozd.1 | 5oze.1 | 5ozf.1 | 5ozg.1 | 5ozh.1 | 5ozi.1 | 5ozj.1 | 5ozk.1 | 5ozl.1 | 5ozm.1 | 5ozn.1 | 5ozo.1 | 5ozp.1 | 5ozq.1 | 5ozr.1 | 5ozs.1 | 5ozt.1 | 5ozu.1 | 5ozv.1 | 5ozw.1 | 5ozx.1 | 5ozy.1 | 5ozz.1 | 5p00.1 | 5p01.1 | 5p02.1 | 5p03.1 | 5p04.1 | 5p05.1 | 5p06.1 | 5p07.1 | 5p08.1 | 5p09.1 | 5p0a.1 | 5p0b.1 | 5p0c.1 | 5p0d.1 | 5p0e.1 | 5p0f.1 | 5p0g.1 | 5p0h.1 | 5p0i.1 | 5p0j.1 | 5p0k.1 | 5p0l.1 | 5p0m.1 | 5p0n.1 | 5p0o.1 | 5p0p.1 | 5p0q.1 | 5p0r.1 | 5p0s.1 | 5p0t.1 | 5p0u.1 | 5p0v.1 | 5p0w.1 | 5p0x.1 | 5p0y.1 | 5p0z.1 | 5p10.1 | 5p11.1 | 5p12.1 | 5p13.1 | 5p14.1 | 5p15.1 | 5p16.1 | 5p17.1 | 5p18.1 | 5p19.1 | 5p1a.1 | 5p1b.1 | 5p1c.1 | 5p1d.1 | 5p1e.1 | 5p1f.1 | 5p1g.1 | 5p1h.1 | 5p1i.1 | 5p1j.1 | 5p1k.1 | 5p1l.1 | 5p1m.1 | 5p1n.1 | 5p1o.1 | 5p1p.1 | 5p1q.1 | 5p1r.1 | 5p1s.1 | 5p1t.1 | 5p1u.1 | 5p1v.1 | 5p1w.1 | 5p1x.1 | 5p1y.1 | 5p1z.1 | 5p20.1 | 5p22.1 | 5p23.1 | 5p24.1 | 5p25.1 | 5p26.1 | 5p27.1 | 5p28.1 | 5p29.1 | 5p2a.1 | 5p2b.1 | 5p2c.1 | 5p2d.1 | 5p2e.1 | 5p2f.1 | 5p2g.1 | 5p2h.1 | 5p2i.1 | 5p2j.1 | 5p2k.1 | 5p2l.1 | 5p2m.1 | 5p2n.1 | 5p2o.1 | 5p2q.1 | 5p2r.1 | 5p2s.1 | 5p2t.1 | 5p2u.1 | 5p2v.1 | 5p2w.1 | 5p2x.1 | 5p2y.1 | 5p2z.1 | 5p30.1 | 5p31.1 | 5p32.1 | 5p33.1 | 5p34.1 | 5p35.1 | 5p36.1 | 5p37.1 | 5p38.1 | 5p39.1 | 5p3a.1 | 5p3b.1 | 5p3c.1 | 5p3d.1 | 5p3e.1 | 5p3f.1 | 5p3g.1 | 5p3h.1 | 5p3i.1 | 5p3j.1 | 5p3k.1 | 5p3l.1 | 5p3m.1 | 5p3n.1 | 5p3o.1 | 5p3p.1 | 5p3q.1 | 5p3r.1 | 5p3s.1 | 5p3t.1 | 5p3u.1 | 5p3v.1 | 5p3w.1 | 5p3x.1 | 5p3y.1 | 5p3z.1 | 5p40.1 | 5p41.1 | 5p42.1 | 5p43.1 | 5p44.1 | 5p45.1 | 5p46.1 | 5p47.1 | 5p48.1 | 5p49.1 | 5p4a.1 | 5p4b.1 | 5p4c.1 | 5p4d.1 | 5p4e.1 | 5p4f.1 | 5p4g.1 | 5p4h.1 | 5p4i.1 | 5p4j.1 | 5p4k.1 | 5p4l.1 | 5p4m.1 | 5p4n.1 | 5p4o.1 | 5p4p.1 | 5p4q.1 | 5p4r.1 | 5p4s.1 | 5p4t.1 | 5p4u.1 | 5p4v.1 | 5p4w.1 | 5p4x.1 | 5p4y.1 | 5p4z.1 | 5p50.1 | 5p51.1 | 5p52.1 | 5p53.1 | 5p54.1 | 5p55.1 | 5p56.1 | 5p57.1 | 5p58.1 | 5p59.1 | 5p5a.1 | 5p5b.1 | 5p5c.1 | 5p5d.1 | 5p5e.1 | 5p5f.1 | 5p5g.1 | 5p5h.1 | 5p5i.1 | 5p5j.1 | 5p5k.1 | 5p5l.1 | 5p5m.1 | 5p5n.1 | 5p5o.1 | 5p5p.1 | 5p5q.1 | 5p5r.1 | 5p5s.1 | 5p5t.1 | 5p5u.1 | 5p5v.1 | 5p5w.1 | 5p5x.1 | 5p5y.1 | 5p5z.1 | 5p60.1 | 5p61.1 | 5p62.1 | 5p63.1 | 5p64.1 | 5p65.1 | 5p66.1 | 5p67.1 | 5p68.1 | 5p69.1 | 5p6a.1 | 5p6b.1 | 5p6c.1 | 5p6d.1 | 5p6e.1 | 5p6f.1 | 5p6g.1 | 5p6h.1 | 5p6i.1 | 5p6j.1 | 5p6k.1 | 5p6l.1 | 5p6m.1 | 5p6n.1 | 5p6o.1 | 5p6p.1 | 5p6q.1 | 5p6r.1 | 5p6s.1 | 5p6t.1 | 5p6u.1 | 5p6v.1 | 5p6w.1 | 5p6x.1 | 5p6y.1 | 5p6z.1 | 5p70.1 | 5p71.1 | 5p72.1 | 5p73.1 | 5p74.1 | 5p75.1 | 5p76.1 | 5p77.1 | 5p78.1 | 5p79.1 | 5p7a.1 | 5p7b.1 | 5p7c.1 | 5p7d.1 | 5p7e.1 | 5p7f.1 | 5p7g.1 | 5p7h.1 | 5p7i.1 | 5p7j.1 | 5p7k.1 | 5p7l.1 | 5p7m.1 | 5p7n.1 | 5p7o.1 | 5p7p.1 | 5p7q.1 | 5p7r.1 | 5p7s.1 | 5p7t.1 | 5p7u.1 | 5p7v.1 | 5p7w.1 | 5p7x.1 | 5p7y.1 | 5p7z.1 | 5p80.1 | 5p81.1 | 5p82.1 | 5p83.1 | 5p84.1 | 5p85.1 | 5p86.1 | 5p87.1 | 5p88.1 | 5p89.1 | 5p8a.1 | 5p8b.1 | 5p8c.1 | 5p8d.1 | 5p8e.1 | 5p8f.1 | 5p8g.1 | 5p8h.1 | 5p8i.1 | 5p8j.1 | 5p8k.1 | 5p8l.1 | 5p8m.1 | 5p8n.1 | 5p8o.1 | 5p8p.1 | 5p8q.1 | 5p8r.1 | 5p8s.1 | 5p8t.1 | 5p8u.1 | 5p8v.1 | 5qb5.1 | 5qb6.1 | 5qb7.1 | 5qb8.1 | 5qb9.1 | 5qba.1 | 5qbb.1 | 5qbc.1 | 5qbd.1 | 5qbe.1 | 5qbf.1 | 5qbg.1 | 5qbh.1 | 5qbi.1 | 5qbj.1 | 5qbk.1 | 5qbl.1 | 5qbm.1 | 5qbn.1 | 5qbo.1 | 5qbp.1 | 5qbq.1 | 5qbr.1 | 5qbs.1 | 5qbt.1 | 6ron.1 | 6rsv.1 | 6scv.1 | 7bkr.1 | 7bks.1 | 7bku.1 | 7bkv.1 | 7bkw.1 | 7bky.1 | 7bkz.1 | 7h56.1 | 7h57.1 | 7h58.1 | 7h59.1 | 7h5a.1 | 7h5b.1 | 7h5c.1 | 7h5d.1 | 7h5e.1 | 7h5f.1 | 7h5g.1 | 7h5h.1 | 7h5i.1 | 7h5j.1 | 7h5k.1 | 7h5l.1 | 7h5m.1 | 7h5n.1 | 7h5o.1 | 7h5p.1 | 7h5q.1 | 7h5r.1 | 7h5s.1 | 7h5t.1 | 7h5u.1 | 7h5v.1 | 7h5w.1 | 7h5x.1 | 7h5y.1 | 7h5z.1 | 7nkw.1 | 8pxi.1 | 8q0v.1 | 8q0w.1 | 8q0x.1 | 8q0y.1 | 8q0z.1 | 8q10.1 | 8q11.1 | 8q12.1 | 8q13.1 | 8q14.1 | 8q4b.1 | 9fvo.1 | 9g34.1 | 9g34.2 | 9g35.1

Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog

Background

Transparent

Resolution

Low
Medium
High
Extreme

Swiss Institute of BioinformaticsSIB
Schwede Group
Contact Us
Terms of use
Back to the Top