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SMTL ID : 5hco.1

Endothiapepsin in complex with hydrazide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.17 Å

Oligo State

monomer

Ligands

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.1:	5 residues within 4Å: Chain A: C.255, D.279, G.281, P.282, C.290 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.279, A:G.281
ACT.2:	4 residues within 4Å: Chain A: T.6, P.166, G.167, T.168 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.168, A:T.168 Water bridges: A:T.6

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3:

6 residues within 4Å:

Chain A: Y.202, K.210, T.212, P.228, T.230, V.231

3 PLIP interactions:

3 interactions with chain A

Hydrogen bonds: A:T.212
Water bridges: A:T.230, A:T.230

1 x 601: 4-(dimethylamino)benzohydrazide(Non-covalent)

601.4:

15 residues within 4Å:

Chain A: D.33, D.35, G.37, Y.79, G.80, D.81, S.83, S.115, F.116, D.119, I.122, L.125, D.219, G.221, T.222

6 PLIP interactions:

6 interactions with chain A

Hydrophobic interactions: A:Y.79, A:L.125
Hydrogen bonds: A:D.35, A:D.219, A:T.222
Water bridges: A:G.80

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.5:

9 residues within 4Å:

Chain A: L.13, D.15, T.223, L.224, Y.226, V.248, F.280, I.283, F.291

1 PLIP interactions:

1 interactions with chain A

Water bridges: A:Y.226

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.6:

2 residues within 4Å:

Chain A: P.26, A.27

1 PLIP interactions:

1 interactions with chain A

Hydrogen bonds: A:A.27

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Radeva, N. et al., Crystallographic Fragment Screening of an Entire Library. To Be Published

Release Date

2017-01-11

Peptides

Endothiapepsin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Endothiapepsin

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