SMTL ID : 3wz7.1

Endothiapepsin in complex with Gewald reaction-derived inhibitor (6)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x IXY: N-benzyl-2-({N-[2-(1H-indol-3-yl)ethyl]glycyl}amino)-4,5,6,7-tetrahydro-1-benzothiophene-3-carboxamide(Non-covalent)

IXY.1: 22 residues within 4Å: Chain A: D.33, D.35, G.37, Y.79, G.80, D.81, S.83, S.115, F.116, D.119, I.122, L.125, F.194, I.217, D.219, G.221, T.222, Y.226, I.300, I.302, I.304 Ligands: DMS.2 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:Y.79, A:D.81, A:F.116, A:I.122, A:L.125, A:F.194, A:I.300, A:I.300, A:I.302, A:I.304 Hydrogen bonds: A:G.80, A:D.81, A:S.83, A:S.115, A:D.219, A:T.222

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 5 residues within 4Å: Chain A: D.81, G.221, T.222, T.223 Ligands: IXY.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.223 Water bridges: A:L.224

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kuhnert, M. et al., Tracing binding modes in hit-to-lead optimization: chameleon-like poses of aspartic protease inhibitors. Angew.Chem.Int.Ed.Engl. (2015)

Release Date

2015-08-05

Peptides

Endothiapepsin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Endothiapepsin

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