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SMTL ID : 5mb5.1

Cocktail experiment C: fragments 103 and 171 in complex with Endothiapepsin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 0.98 Å

Oligo State

monomer

Ligands

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.1:	6 residues within 4Å: Chain A: D.81, G.82, S.83, S.113, S.114, S.115 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.113, A:S.114, A:S.115, A:S.115
DMS.2:	2 residues within 4Å: Chain A: P.26, A.27 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.27

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3:	6 residues within 4Å: Chain A: V.272, P.274, Y.277, A.312, S.329, K.330 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.329, A:K.330, A:K.330 Water bridges: A:V.272
GOL.4:	6 residues within 4Å: Chain A: P.228, S.297, A.298, G.301, I.302, N.303 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.301, A:I.302

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.5:

6 residues within 4Å:

Chain A: C.255, D.279, G.281, P.282, C.290
Ligands: 46P.6

1 PLIP interactions:

1 interactions with chain A

Hydrogen bonds: A:D.279

1 x 46P: 4-methyl-5-(1-methyl-1H-imidazol-2-yl)-1,3-thiazol-2-amine(Non-covalent)

46P.6:

9 residues within 4Å:

Chain A: Y.163, F.253, A.257, T.258, L.259, G.275, D.276, D.279
Ligands: ACT.5

5 PLIP interactions:

5 interactions with chain A

Hydrophobic interactions: A:F.253, A:L.259, A:D.279
Hydrogen bonds: A:L.259, A:L.259

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Radeva, N. et al., Comparison of cocktails versus single soaking experiments. To Be Published

Release Date

2018-01-17

Peptides

Endothiapepsin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Endothiapepsin

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1e5o.1 | 1e80.1 | 1e81.1 | 1e82.1 | 1eed.1 | 1ent.1 | 1epl.1 | 1epm.1 | 1epn.1 | 1epo.1 | 1epp.1 | 1epq.1 | 1epr.1 | 1er8.1 | 1od1.1 | 2er0.1 | 2er6.1 | 2er7.1 | 2er9.1 | 2v00.1 | 3er3.1 | 3er5.1 | 3lzy.1 | 3pb5.1 | 3pbd.1 | 3pbz.1 | 3pcw.1 | 3pcz.1 | 3pgi.1 | 3pi0.1 more...less...

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