4y5n.1 | SWISS-MODEL Template Library

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SMTL ID : 4y5n.1

Endothiapepsin in complex with fragment 337

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.29 Å

Oligo State

monomer

Ligands

1 x 487: 6-[(1S)-1-(azepan-1-yl)ethyl]-N,N-dimethyl-1,3,5-triazine-2,4-diamine

487.1:

10 residues within 4Å:

Chain A: D.15, T.223, L.224, V.248, G.249, F.280, G.281, P.282, I.283, F.291

6 PLIP interactions:

6 interactions with chain A

Hydrophobic interactions: A:V.248, A:F.291, A:F.291
Hydrogen bonds: A:F.280, A:I.283
pi-Stacking: A:F.291

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2:	6 residues within 4Å: Chain A: V.272, P.274, Y.277, A.312, S.329, K.330 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.329, A:K.330, A:K.330 Water bridges: A:V.272
GOL.3:	7 residues within 4Å: Chain A: P.228, S.297, A.298, I.300, G.301, I.302, N.303 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.301, A:I.302 Water bridges: A:A.229, A:I.300

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.4:

5 residues within 4Å:

Chain A: C.255, D.279, G.281, P.282, C.290

2 PLIP interactions:

2 interactions with chain A

Hydrogen bonds: A:D.279, A:G.281

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5:

6 residues within 4Å:

Chain A: S.233, W.236, A.237, A.242, K.243, Y.251

4 PLIP interactions:

4 interactions with chain A

Hydrogen bonds: A:S.233, A:A.242, A:Y.251
Water bridges: A:S.233

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Fu, K. et al., Crystallographic Fragment Screening of an Entire Library. To Be Published

Release Date

2016-03-02

Peptides

Endothiapepsin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Endothiapepsin

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