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SMTL ID : 4l6b.1

Endothiapepsin in complex with thiophen-based inhibitor SAP128

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.37 Å

Oligo State

monomer

Ligands

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.1:	5 residues within 4Å: Chain A: D.81, G.221, T.222, T.223 Ligands: 1VS.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.223 Water bridges: A:L.224
DMS.2:	5 residues within 4Å: Chain A: G.37, S.38, I.77, S.78, F.194 1 PLIP interactions: 1 interactions with chain A Water bridges: A:S.39

1 x 1VS: N-ETHYL-2-({N-[2-(1H-INDOL-3-YL)ETHYL]GLYCYL}AMINO)-4-PHENYLTHIOPHENE-3-CARBOXAMIDE(Non-covalent)

1VS.3:

19 residues within 4Å:

Chain A: D.33, D.35, G.37, Y.79, G.80, D.81, S.83, F.116, D.119, I.122, L.125, F.194, I.217, D.219, G.221, T.222, I.300, I.304
Ligands: DMS.1

14 PLIP interactions:

14 interactions with chain A

Hydrophobic interactions: A:Y.79, A:D.81, A:F.116, A:F.116, A:I.122, A:L.125, A:I.300, A:I.300, A:I.304
Hydrogen bonds: A:G.80, A:D.81, A:S.83, A:D.219, A:T.222

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4:

6 residues within 4Å:

Chain A: V.272, P.274, Y.277, A.312, S.329, K.330

3 PLIP interactions:

3 interactions with chain A

Hydrogen bonds: A:K.330, A:K.330
Water bridges: A:V.272

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Kuhnert, M. et al., Endothiapepsin in Complex with Thiophen based Inhibitors. To be Published

Release Date

2014-06-18

Peptides

Endothiapepsin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Endothiapepsin

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