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SMTL ID : 5qbi.1

Crystal structure of Endothiapepsin-FRG274 complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.62 Å

Oligo State

monomer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1:	6 residues within 4Å: Chain A: V.272, P.274, Y.277, A.312, S.329, K.330 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:V.272, A:K.330, A:K.330 Water bridges: A:V.272
GOL.2:	1 residues within 4Å: Chain A: T.8 No protein-ligand interaction detected (PLIP)
GOL.3:	6 residues within 4Å: Chain A: Y.202, A.203, V.204, G.207, T.208, K.210 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.204, A:G.207

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.4:

5 residues within 4Å:

Chain A: C.255, D.279, G.281, P.282, C.290

No protein-ligand interaction detected (PLIP)

1 x D8P: [(2S)-1,9-dimethyl-1,2,3,4,5,6-hexahydropyrido[2,3-b][1,5]diazocin-2-yl]methanol(Non-covalent)

D8P.5:

12 residues within 4Å:

Chain A: D.15, D.33, D.35, Y.79, D.81, S.83, S.115, F.116, I.122, L.125, G.221, T.223

6 PLIP interactions:

6 interactions with chain A

Hydrophobic interactions: A:Y.79, A:F.116, A:F.116
Hydrogen bonds: A:T.223
Water bridges: A:T.223
pi-Stacking: A:Y.79

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Huschmann, F.U. et al., Crystal structure of Endothiapepsin. To be published

Release Date

2020-04-22

Peptides

Endothiapepsin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Endothiapepsin

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