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SMTL ID : 4y3w.1

Endothiapepsin in complex with fragment 35

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.58 Å

Oligo State

monomer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1:

7 residues within 4Å:

Chain A: V.272, P.274, Y.277, A.312, A.313, S.329, K.330

3 PLIP interactions:

3 interactions with chain A

Hydrogen bonds: A:K.330, A:K.330
Water bridges: A:V.272

2 x 46Q: (2R)-2-methyl-2-(morpholin-4-yl)butan-1-amine(Non-covalent)

46Q.2:	9 residues within 4Å: Chain A: I.10, D.15, A.16, D.81, S.83, S.115, F.116, D.119, I.122 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.116 Hydrogen bonds: A:S.115 Salt bridges: A:D.119
46Q.3:	8 residues within 4Å: Chain A: L.13, D.15, T.223, L.224, F.280, P.282, I.283, F.291 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.15

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4:

6 residues within 4Å:

Chain A: A.187, S.189, E.196, W.197, T.198, D.215

3 PLIP interactions:

3 interactions with chain A

Hydrogen bonds: A:E.196, A:T.198
Water bridges: A:T.198

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Radeva, N. et al., Crystallographic Fragment Screening of an Entire Library. To Be Published

Release Date

2016-02-17

Peptides

Endothiapepsin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Endothiapepsin

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