SMTL ID : 4lap.1

Endothiapepsin in complex with thiophen-based inhibitor SAP114

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.12 Å

Oligo State

monomer

Ligands

1 x 1VT: N-BENZYL-2-[(N-BENZYL-BETA-ALANYL)AMINO]-4-PHENYLTHIOPHENE-3-CARBOXAMIDE(Non-covalent)

1VT.1: 17 residues within 4Å: Chain A: I.10, D.15, D.33, Y.79, G.80, D.81, S.83, F.116, D.119, L.125, D.219, G.221, T.222, T.223, Y.226, I.300, I.304 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:I.10, A:D.15, A:Y.79, A:D.81, A:F.116, A:F.116, A:L.125, A:I.300, A:I.304 Hydrogen bonds: A:G.80, A:D.81, A:D.81, A:G.221, A:T.223 Water bridges: A:L.224

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: V.272, P.274, Y.277, A.312, S.329, K.330 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:V.272, A:K.330, A:K.330 Water bridges: A:V.272

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3: 3 residues within 4Å: Chain A: S.4, A.5, T.6 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kuhnert, M. et al., Endothiapepsin in Complex with Thiophen based Inhibitors. To be Published

Release Date

2014-12-24

Peptides

Endothiapepsin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Endothiapepsin

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