5lwu.1 | SWISS-MODEL Template Library

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SMTL ID : 5lwu.1

Structure resulting from an endothiapepsin crystal soaked with a dimeric derivative of fragment 177

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.11 Å

Oligo State

monomer

Ligands

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.1:	6 residues within 4Å: Chain A: S.233, W.236, A.237, A.242, K.243, Y.251 No protein-ligand interaction detected (PLIP)
DMS.2:	2 residues within 4Å: Chain A: P.26, A.27 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.27

2 x TFA: trifluoroacetic acid(Non-covalent)

TFA.3:	9 residues within 4Å: Chain A: G.241, A.242, K.243, V.252, F.253, P.254, S.288, S.289, C.290 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.289 Halogen bonds: A:G.241, A:S.289
TFA.4:	7 residues within 4Å: Chain A: A.129, F.130, S.131, T.143, F.145, D.146, W.195 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.131 Water bridges: A:T.132, A:T.143

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.5:	6 residues within 4Å: Chain A: V.272, P.274, Y.277, A.312, S.329, K.330 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.329, A:K.330, A:K.330 Water bridges: A:V.272
GOL.6:	7 residues within 4Å: Chain A: Y.202, A.203, V.204, G.207, T.208, K.210, A.234 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:V.204, A:G.207 Water bridges: A:T.208, A:T.208

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.7:	5 residues within 4Å: Chain A: C.255, D.279, G.281, P.282, C.290 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.279
ACT.8:	4 residues within 4Å: Chain A: T.6, P.166, G.167, T.168 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.168, A:T.168

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Cramer, J. et al., A False-Positive Screening Hit in Fragment-Based Lead Discovery: Watch out for the Red Herring. Angew. Chem. Int. Ed. Engl. (2017)

Release Date

2017-08-09

Peptides

Endothiapepsin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Endothiapepsin

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