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SMTL ID : 4y57.1

Endothiapepsin in complex with fragment 63

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.49 Å

Oligo State

monomer

Ligands

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.1:

6 residues within 4Å:

Chain A: G.82, S.83, S.113, S.114, S.115, F.116

5 PLIP interactions:

5 interactions with chain A

Hydrogen bonds: A:S.113, A:S.113, A:S.114, A:S.115, A:S.115

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2:	6 residues within 4Å: Chain A: V.272, P.274, Y.277, A.312, S.329, K.330 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:V.272, A:K.330, A:K.330 Water bridges: A:V.272
GOL.3:	6 residues within 4Å: Chain A: P.228, S.297, A.298, G.301, I.302, N.303 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.301 Water bridges: A:A.229, A:G.301, A:G.301

1 x F63: N-methyl-1-[5-(pyridin-3-yloxy)furan-2-yl]methanamine(Non-covalent)

F63.4:

12 residues within 4Å:

Chain A: D.33, D.35, Y.79, G.80, D.81, S.83, S.115, F.116, I.122, L.125, G.221, T.222

4 PLIP interactions:

4 interactions with chain A

Hydrophobic interactions: A:F.116, A:I.122
Hydrogen bonds: A:D.81
Water bridges: A:G.80

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5:

5 residues within 4Å:

Chain A: S.189, E.196, W.197, T.198, D.215

1 PLIP interactions:

1 interactions with chain A

Hydrogen bonds: A:E.196

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Radeva, N. et al., Crystallographic Fragment Screening of an Entire Library. To Be Published

Release Date

2016-03-02

Peptides

Endothiapepsin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Endothiapepsin

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