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SMTL ID : 3wz6.1

Endothiapepsin in complex with Gewald reaction-derived inhibitor (5)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

3 x ACT: ACETATE ION(Non-functional Binders)

ACT.1:	3 residues within 4Å: Chain A: S.233, A.237, Y.251 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:A.237 Hydrogen bonds: A:S.233, A:Y.251 Water bridges: A:S.233, A:S.233
ACT.2:	3 residues within 4Å: Chain A: Q.140, Q.141, K.142 2 PLIP interactions: 2 interactions with chain A Water bridges: A:K.142 Salt bridges: A:K.142
ACT.3:	5 residues within 4Å: Chain A: C.255, D.279, G.281, P.282, C.290 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.279

2 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.4:	8 residues within 4Å: Chain A: D.15, T.223, L.224, V.248, F.280, P.282, I.283, F.291 2 PLIP interactions: 2 interactions with chain A Water bridges: A:Y.226, A:V.248
PG4.5:	7 residues within 4Å: Chain A: A.187, V.188, S.189, E.196, W.197, T.198, D.215 1 PLIP interactions: 1 interactions with chain A Water bridges: A:T.198

1 x PG6: 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE(Non-covalent)

PG6.6:

5 residues within 4Å:

Chain A: T.2, S.4, T.168, F.173, D.175

2 PLIP interactions:

2 interactions with chain A

Hydrogen bonds: A:D.175
Water bridges: A:N.170

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.7:	4 residues within 4Å: Chain A: V.272, P.274, Y.277, K.330 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.272 Water bridges: A:K.330, A:K.330
PEG.8:	5 residues within 4Å: Chain A: I.10, D.15, A.16, D.119, T.223 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.119 Water bridges: A:T.223

1 x IXZ: N-benzyl-2-[(N-benzylglycyl)amino]-4-phenylthiophene-3-carboxamide(Non-covalent)

IXZ.9:

15 residues within 4Å:

Chain A: D.33, D.35, G.37, Y.79, G.80, D.81, F.116, L.125, I.217, D.219, G.221, T.222, Y.226, I.300, I.304

12 PLIP interactions:

12 interactions with chain A

Hydrophobic interactions: A:Y.79, A:D.81, A:F.116, A:F.116, A:L.125, A:Y.226, A:I.300, A:I.300, A:I.304
Hydrogen bonds: A:G.80, A:D.219, A:T.222

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Kuhnert, M. et al., Tracing binding modes in hit-to-lead optimization: chameleon-like poses of aspartic protease inhibitors. Angew.Chem.Int.Ed.Engl. (2015)

Release Date

2015-08-05

Peptides

Endothiapepsin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Endothiapepsin

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