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SMTL ID : 5qbd.1

Crystal structure of Endothiapepsin-FRG166 complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.42 Å

Oligo State

monomer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1:	6 residues within 4Å: Chain A: V.272, P.274, Y.277, A.312, S.329, K.330 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:V.272, A:K.330, A:K.330 Water bridges: A:V.272
GOL.2:	2 residues within 4Å: Chain A: T.8, P.166 1 PLIP interactions: 1 interactions with chain A Water bridges: A:T.8
GOL.3:	6 residues within 4Å: Chain A: Y.202, A.203, V.204, G.207, T.208, K.210 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.204, A:G.207

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.4:

5 residues within 4Å:

Chain A: C.255, D.279, G.281, P.282, C.290

1 PLIP interactions:

1 interactions with chain A

Salt bridges: A:D.279

1 x D8A: (1R,2S,3R,4R)-3-amino-4-cyclohexylcyclopentane-1,2-diol(Non-covalent)

D8A.5:

7 residues within 4Å:

Chain A: D.15, T.223, L.224, F.280, P.282, I.283, F.291

10 PLIP interactions:

10 interactions with chain A

Hydrophobic interactions: A:L.224, A:F.291, A:F.291, A:F.291
Hydrogen bonds: A:T.223, A:T.223, A:Y.226
Water bridges: A:D.15, A:D.15, A:T.223

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Huschmann, F.U. et al., Crystal structure of Endothiapepsin. To be published

Release Date

2020-04-22

Peptides

Endothiapepsin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Endothiapepsin

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