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SMTL ID : 3svg.1

Crystal Structure of the first bromodomain of human BRD4 in complex with a 3,5-dimethylisoxazol ligand

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.68 Å

Oligo State

monomer

Ligands

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1:	6 residues within 4Å: Chain A: I.59, I.60, K.61, T.62, N.94, I.97 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:I.59, A:K.61, A:T.62, A:T.62, A:N.94
EDO.2:	4 residues within 4Å: Chain A: L.115, Q.118, K.119, E.122 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.118, A:K.119, A:E.122
EDO.3:	5 residues within 4Å: Chain A: Y.96, N.99, K.100, P.101, V.106 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.99 Water bridges: A:E.110

1 x ODR: (1R)-1-[3-(3,5-dimethyl-1,2-oxazol-4-yl)-5-ethoxyphenyl]ethanol(Non-covalent)

ODR.4:

9 residues within 4Å:

Chain A: W.40, P.41, Q.44, V.46, L.51, L.53, N.99, I.105, M.108

7 PLIP interactions:

7 interactions with chain A

Hydrophobic interactions: A:W.40, A:V.46, A:L.51, A:L.53, A:I.105, A:I.105
Hydrogen bonds: A:N.99

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Filippakopoulos, P. et al., Crystal Structure of the first bromodomain of human BRD4 in complex with a 3,5-dimethylisoxazol ligand. TO BE PUBLISHED

Release Date

2011-08-10

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Bromodomain-containing protein 4

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2oss.1 | 2yel.1 | 3mxf.1 | 3p5o.1 | 3svf.1 | 3u5j.1 | 3u5k.1 | 3u5k.2 | 3u5k.3 | 3u5k.4 | 3u5l.1 | 3uvw.1 | 3uvx.1 | 3uvy.1 | 3uw9.1 | 3uw9.2 | 3zyu.1 | 3zyu.2 | 4a9l.1 | 4bw1.1 | 4bw2.1 | 4bw3.1 | 4bw4.1 | 4c67.1 | 4cfk.1 | 4cfl.1 | 4cl9.1 | 4clb.1 | 4e96.1 | 4f3i.1 more...less...

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