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SMTL ID : 3uvx.1

Crystal Structure of the first bromodomain of human BRD4 in complex with a diacetylated histone 4 peptide (H4K12acK16ac)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.91 Å

Oligo State

hetero-1-1-mer

Ligands

2 x NA: SODIUM ION(Non-functional Binders)

NA.1:	2 residues within 4Å: Chain A: N.20, Q.23 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.23
NA.2:	1 residues within 4Å: Chain A: E.8 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.8 Water bridges: A:E.8

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3:

5 residues within 4Å:

Chain A: I.59, I.60, K.61, T.62, N.94

5 PLIP interactions:

5 interactions with chain A

Hydrogen bonds: A:I.59, A:K.61, A:T.62, A:T.62, A:N.94

3 x FMT: FORMIC ACID(Non-functional Binders)

FMT.4:	5 residues within 4Å: Chain A: T.19, Q.21, N.80, A.81, E.126 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.19, A:T.19, A:A.81 Water bridges: A:Q.82
FMT.5:	5 residues within 4Å: Chain A: S.10, N.11, K.16, N.75, Y.77 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.11, A:N.11 Water bridges: A:K.14
FMT.6:	2 residues within 4Å: Chain A: R.72, D.87 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.72, A:R.72 Water bridges: A:D.87, A:D.87, A:D.87

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Filippakopoulos, P. et al., Histone recognition and large-scale structural analysis of the human bromodomain family. Cell(Cambridge,Mass.) (2012)

Release Date

2012-01-25

Peptides

Bromodomain-containing protein 4: A
diacetylated histone 4 peptide: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Bromodomain-containing protein 4

diacetylated histone 4 peptide

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