SMTL ID : 4a9l.1

N-TERMINAL BROMODOMAIN OF HUMAN BRD4 WITH 1,3-DIMETHYL-6-(MORPHOLINE- 4-SULFONYL)-1,2,3,4-TETRAHYDROQUINAZOLIN-2-ONE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: I.59, I.60, K.61, T.62, N.94 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:I.59, A:K.61, A:T.62, A:T.62, A:T.62, A:N.94 EDO.2: 2 residues within 4Å: Chain A: W.40, Q.44 2 PLIP interactions: 2 interactions with chain A Water bridges: A:Q.44, A:K.50 EDO.3: 2 residues within 4Å: Chain A: L.26, E.74 1 PLIP interactions: 1 interactions with chain A Water bridges: A:E.74

1 x P9L: 1,3-dimethyl-6-(morpholin-4-ylsulfonyl)-3,4-dihydroquinazolin-2(1H)-one(Non-covalent)

P9L.4: 11 residues within 4Å: Chain A: W.40, P.41, F.42, V.46, L.51, L.53, Y.98, N.99, D.104, I.105, M.108 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.51, A:L.53 Hydrogen bonds: A:N.99 Water bridges: A:I.105

2 x NO3: NITRATE ION(Non-functional Binders)

NO3.5: 3 residues within 4Å: Chain A: G.102, D.103, D.104 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.103, A:D.104 Water bridges: A:I.105 NO3.6: 6 residues within 4Å: Chain A: T.19, Q.21, L.22, N.80, A.81, E.126 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.81, A:E.126 Water bridges: A:Q.82

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chung, C.W. et al., Fragment-Based Discovery of Bromodomain Inhibitors Part 1: Inhibitor Binding Modes and Implications for Lead Discovery. J.Med.Chem. (2012)

Release Date

2012-01-11

Peptides

BROMODOMAIN-CONTAINING PROTEIN 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

BROMODOMAIN-CONTAINING PROTEIN 4

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