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SMTL ID : 4cfl.1

N-TERMINAL BROMODOMAIN OF HUMAN BRD4 WITH LY303511

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.32 Å

Oligo State

monomer

Ligands

1 x 8DQ: 8-phenyl-2-piperazin-1-yl-chromen-4-one(Non-covalent)

8DQ.1:

11 residues within 4Å:

Chain A: W.40, P.41, F.42, V.46, L.51, L.53, Y.56, Y.98, N.99, I.105
Ligands: GOL.3

9 PLIP interactions:

9 interactions with chain A

Hydrophobic interactions: A:W.40, A:F.42, A:V.46, A:L.51, A:L.51, A:Y.98, A:I.105, A:I.105
Hydrogen bonds: A:N.99

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2:

5 residues within 4Å:

Chain A: I.59, I.60, K.61, T.62, N.94

5 PLIP interactions:

5 interactions with chain A

Hydrogen bonds: A:I.59, A:K.61, A:T.62, A:T.62, A:T.62

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3:

4 residues within 4Å:

Chain A: D.103, D.104, I.105
Ligands: 8DQ.1

2 PLIP interactions:

2 interactions with chain A

Hydrogen bonds: A:D.104, A:I.105

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Dittmann, A. et al., The Commonly Used Pi3-Kinase Probe Ly294002 is an Inhibitor of Bet Bromodomains. Acs Chem.Biol. (2014)

Release Date

2014-01-15

Peptides

BRD4 PROTEIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

BRD4 PROTEIN

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