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SMTL ID : 4e96.1

Crystal Structure of the first bromodomain of human BRD4 in complex with the inhibitor PFi-1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.92 Å

Oligo State

monomer

Ligands

1 x 0NS: 2-methoxy-N-(3-methyl-2-oxo-1,2,3,4-tetrahydroquinazolin-6-yl)benzenesulfonamide(Non-covalent)

0NS.1:

10 residues within 4Å:

Chain A: W.40, F.42, V.46, L.51, L.53, C.95, Y.98, N.99, I.105, M.108

8 PLIP interactions:

8 interactions with chain A

Hydrophobic interactions: A:W.40, A:L.51, A:L.53, A:I.105, A:I.105
Hydrogen bonds: A:N.99, A:N.99
Water bridges: A:L.51

1 x NA: SODIUM ION(Non-functional Binders)

NA.2:

1 residues within 4Å:

Chain A: K.16

2 PLIP interactions:

2 interactions with chain A

Hydrogen bonds: A:K.16, A:K.16

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3:

4 residues within 4Å:

Chain A: P.6, P.45, G.67, K.71

1 PLIP interactions:

1 interactions with chain A

Salt bridges: A:D.65

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4:

5 residues within 4Å:

Chain A: I.59, I.60, K.61, T.62, N.94

4 PLIP interactions:

4 interactions with chain A

Hydrogen bonds: A:K.61, A:T.62, A:T.62, A:N.94

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Fish, P.V. et al., Identification of a chemical probe for bromo and extra C-terminal bromodomain inhibition through optimization of a fragment-derived hit. J.Med.Chem. (2012)

Release Date

2012-04-18

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Bromodomain-containing protein 4

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