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SMTL ID : 4j3i.1

X-ray crystal structure of bromodomain complex to 1.24 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.24 Å

Oligo State

monomer

Ligands

1 x 1K0: 2-[4-(2-hydroxyethoxy)-3,5-dimethylphenyl]-5,7-dimethoxyquinazolin-4(3H)-one(Non-covalent)

1K0.1:

10 residues within 4Å:

Chain A: W.40, P.41, F.42, V.46, L.51, L.53, N.99, D.103, I.105
Ligands: EDO.2

8 PLIP interactions:

8 interactions with chain A

Hydrophobic interactions: A:P.41, A:V.46, A:L.51, A:L.53, A:I.105, A:I.105
Hydrogen bonds: A:N.99, A:N.99

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2:	6 residues within 4Å: Chain A: W.40, P.41, D.104, I.105, M.108 Ligands: 1K0.1 1 PLIP interactions: 1 interactions with chain A Water bridges: A:D.104
EDO.3:	5 residues within 4Å: Chain A: I.59, I.60, K.61, T.62, N.94 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:I.59, A:K.61, A:T.62, A:T.62, A:N.94

1 x NA: SODIUM ION(Non-functional Binders)

NA.4:

4 residues within 4Å:

Chain A: P.45, V.46, Y.57, M.64

4 PLIP interactions:

4 interactions with chain A

Hydrogen bonds: A:V.46, A:Y.57, A:Y.57
Water bridges: A:Y.56

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

McLure, K.G. et al., RVX-208, an Inducer of ApoA-I in Humans, Is a BET Bromodomain Antagonist. Plos One (2013)

Release Date

2014-01-15

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Bromodomain-containing protein 4

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