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SMTL ID : 4lyi.1

Crystal Structure of apo-BRD4(1)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

monomer

Ligands

10 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1:	3 residues within 4Å: Chain A: G.102, V.106, E.110 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.102 Water bridges: A:E.110, A:E.110
EDO.2:	1 residues within 4Å: Ligands: EDO.9 No protein-ligand interaction detected (PLIP)
EDO.3:	5 residues within 4Å: Chain A: I.59, I.60, K.61, T.62, N.94 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:I.59, A:K.61, A:T.62, A:T.62
EDO.4:	5 residues within 4Å: Chain A: W.34, K.35, H.36, A.39, Q.43 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:W.34, A:H.36, A:Q.43 Water bridges: A:A.39
EDO.5:	0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)
EDO.6:	7 residues within 4Å: Chain A: P.41, Q.44, P.45, V.46, D.47, L.51 Ligands: EDO.7 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.44, A:P.45, A:D.47
EDO.7:	5 residues within 4Å: Chain A: W.40, P.41, L.51 Ligands: EDO.6, EDO.8 1 PLIP interactions: 1 interactions with chain A Water bridges: A:Q.44
EDO.8:	6 residues within 4Å: Chain A: W.40, P.41, D.104, I.105, M.108 Ligands: EDO.7 1 PLIP interactions: 1 interactions with chain A Water bridges: A:I.105
EDO.9:	1 residues within 4Å: Ligands: EDO.2 No protein-ligand interaction detected (PLIP)
EDO.10:	4 residues within 4Å: Chain A: Q.18, Q.23, L.26, R.27 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.18, A:R.27, A:R.27

1 x IOD: IODIDE ION(Non-functional Binders)

IOD.11:

0 residues within 4Å:

(No contacts)

Ligand excluded by PLIP

1 x NA: SODIUM ION(Non-functional Binders)

NA.12:

3 residues within 4Å:

Chain A: Y.96, I.97, N.99

1 PLIP interactions:

1 interactions with chain A

Hydrogen bonds: A:N.99

1 x 21H: oxydimethanol(Non-covalent)

21H.13:

3 residues within 4Å:

Chain A: Q.118, K.119, E.122

3 PLIP interactions:

3 interactions with chain A

Hydrogen bonds: A:Q.118, A:K.119, A:E.122

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Lucas, X. et al., 4-Acyl pyrroles: mimicking acetylated lysines in histone code reading. Angew.Chem.Int.Ed.Engl. (2013)

Release Date

2014-01-15

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Bromodomain-containing protein 4

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