SMTL ID : 4meo.1

Crystal Structure of the first bromodomain of human BRD4 in complex with a 2-methyl-quinoline ligand

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.72 Å

Oligo State

monomer

Ligands

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 6 residues within 4Å: Chain A: I.59, I.60, K.61, T.62, N.94, I.97 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:I.59, A:K.61, A:T.62, A:T.62

1 x 25V: N-[3-(2-methyl-1-oxidoquinolin-4-yl)phenyl]acetamide(Non-covalent)

25V.2: 12 residues within 4Å: Chain A: W.40, P.41, F.42, Q.44, P.45, V.46, D.47, L.51, L.53, N.99, I.105 Ligands: DMS.3 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:W.40, A:P.41, A:F.42, A:Q.44, A:D.47, A:L.51, A:L.51, A:L.53, A:I.105 Hydrogen bonds: A:Q.44, A:D.47, A:N.99

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3: 2 residues within 4Å: Chain A: W.40 Ligands: 25V.2 1 PLIP interactions: 1 interactions with chain A Water bridges: A:I.105

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vidler, L.R. et al., Discovery of Novel Small-Molecule Inhibitors of BRD4 Using Structure-Based Virtual Screening. J.Med.Chem. (2013)

Release Date

2013-09-25

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 4

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