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SMTL ID : 4o75.1

Crystal structure of the first bromodomain of human BRD4 in complex with FOSTAMATINIB

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

monomer

Ligands

1 x 2RC: [6-({5-fluoro-2-[(3,4,5-trimethoxyphenyl)amino]pyrimidin-4-yl}amino)-2,2-dimethyl-3-oxo-2,3-dihydro-4H-pyrido[3,2-b][1,4]oxazin-4-yl]methyl dihydrogen phosphate(Non-covalent)

2RC.1:

13 residues within 4Å:

Chain A: W.40, P.41, F.42, Q.44, V.46, K.50, L.51, L.53, Y.56, Y.98, N.99, I.105
Ligands: EDO.2

5 PLIP interactions:

5 interactions with chain A

Hydrophobic interactions: A:L.51
Hydrogen bonds: A:N.99
Water bridges: A:Q.44
Salt bridges: A:K.50
pi-Stacking: A:W.40

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2:	6 residues within 4Å: Chain A: W.40, P.41, D.104, I.105, M.108 Ligands: 2RC.1 2 PLIP interactions: 2 interactions with chain A Water bridges: A:D.104, A:I.105
EDO.3:	4 residues within 4Å: Chain A: E.8, S.10, N.11, P.12 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.10, A:S.10 Water bridges: A:E.8, A:S.10

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Ember, S.W. et al., Acetyl-lysine Binding Site of Bromodomain-Containing Protein 4 (BRD4) Interacts with Diverse Kinase Inhibitors. Acs Chem.Biol. (2014)

Release Date

2014-03-05

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Bromodomain-containing protein 4

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