4o78.1 | SWISS-MODEL Template Library

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SMTL ID : 4o78.1

Crystal structure of the first bromodomain of human BRD4 in complex with GW612286X

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.34 Å

Oligo State

monomer

Ligands

1 x SAV: N~4~-(3-methyl-1H-indazol-6-yl)-N~2~-(3,4,5-trimethoxyphenyl)pyrimidine-2,4-diamine(Non-covalent)

SAV.1:

14 residues within 4Å:

Chain A: W.40, P.41, F.42, Q.44, V.46, L.51, L.53, Y.56, C.95, Y.98, N.99, D.104, I.105
Ligands: PGE.7

10 PLIP interactions:

10 interactions with chain A

Hydrophobic interactions: A:W.40, A:P.41, A:V.46, A:L.51, A:L.51
Hydrogen bonds: A:P.41, A:Q.44
Water bridges: A:D.47, A:N.99
pi-Stacking: A:W.40

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2:	7 residues within 4Å: Chain A: I.59, I.60, K.61, T.62, T.90, N.94, I.97 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:I.59, A:K.61, A:T.62, A:T.62, A:N.94
EDO.3:	8 residues within 4Å: Chain A: T.9, Q.43, Q.44, P.45, D.65, G.67, T.68, K.71 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.71 Water bridges: A:T.68
EDO.4:	4 residues within 4Å: Chain A: K.16, R.17, Q.18, N.76 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.18, A:N.76
EDO.5:	5 residues within 4Å: Chain A: Y.96, N.99, K.100, P.101, V.106 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.99
EDO.6:	5 residues within 4Å: Chain A: N.52, L.53, P.54, D.55, Y.98 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.52, A:D.55, A:Y.98

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.7:

4 residues within 4Å:

Chain A: K.50, L.51, N.52
Ligands: SAV.1

No protein-ligand interaction detected (PLIP)

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.8:

5 residues within 4Å:

Chain A: P.7, P.45, P.63, M.64, D.65

Ligand excluded by PLIP

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Ember, S.W. et al., Acetyl-lysine Binding Site of Bromodomain-Containing Protein 4 (BRD4) Interacts with Diverse Kinase Inhibitors. Acs Chem.Biol. (2014)

Release Date

2014-03-05

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Bromodomain-containing protein 4

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