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SMTL ID : 4o7b.1

Crystal structure of the first bromodomain of human BRD4 in complex with SB-284847-BT

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

1 x 2RJ: 2-(2,3-dimethylphenoxy)-4-[4-(4-fluorophenyl)-1-(piperidin-4-yl)-1H-imidazol-5-yl]pyrimidine(Non-covalent)

2RJ.1:

17 residues within 4Å:

Chain A: W.40, P.41, F.42, Q.44, V.46, L.51, L.53, Y.56, M.64, M.91, N.94, C.95, Y.98, N.99, D.104, I.105, M.108

10 PLIP interactions:

10 interactions with chain A

Hydrophobic interactions: A:W.40, A:P.41, A:F.42, A:V.46, A:L.51, A:L.51, A:L.53, A:Y.56, A:D.104
Hydrogen bonds: A:N.99

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2:	7 residues within 4Å: Chain A: I.59, I.60, K.61, T.62, T.90, N.94, I.97 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:I.59, A:K.61, A:T.62, A:T.62, A:N.94
EDO.3:	7 residues within 4Å: Chain A: Q.18, L.22, Q.23, L.26, R.27, L.73, N.76 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.18
EDO.4:	5 residues within 4Å: Chain A: P.101, G.102, V.106, L.107, E.110 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.102 Water bridges: A:E.110

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Ember, S.W. et al., Acetyl-lysine Binding Site of Bromodomain-Containing Protein 4 (BRD4) Interacts with Diverse Kinase Inhibitors. Acs Chem.Biol. (2014)

Release Date

2014-03-05

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Bromodomain-containing protein 4

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