SMTL ID : 4uiy.1

N-TERMINAL BROMODOMAIN OF HUMAN BRD4 WITH N-(1,1-dioxo-1-thian-4-yl)- 5-methyl-4-oxo-7-3-(trifluoromethyl)phenyl-4H,5H-thieno-3,2-c- pyridine-2-carboximidamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

monomer

Ligands

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: I.59, I.60, K.61, T.62, N.94 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:I.59, A:K.61, A:T.62, A:T.62, A:T.62, A:N.94 EDO.2: 3 residues within 4Å: Chain A: W.40, Q.44 Ligands: 5V2.4 3 PLIP interactions: 3 interactions with chain A Water bridges: A:Q.44, A:K.50, A:K.50 EDO.3: 5 residues within 4Å: Chain A: W.40, D.104, I.105, M.108 Ligands: 5V2.4 3 PLIP interactions: 3 interactions with chain A Water bridges: A:D.104, A:D.104, A:I.105

1 x 5V2: N-[1,1-bis(oxidanylidene)thian-4-yl]-5-methyl-4-oxidanylidene-7-[3-(trifluoromethyl)phenyl]thieno[3,2-c]pyridine-2-carboximidamide(Non-covalent)

5V2.4: 14 residues within 4Å: Chain A: W.40, P.41, F.42, V.46, L.51, L.53, Y.56, Y.98, N.99, K.100, D.103, I.105 Ligands: EDO.2, EDO.3 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:W.40, A:P.41, A:L.51, A:L.51, A:Y.98, A:I.105, A:I.105 Hydrogen bonds: A:N.99, A:N.99

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Theodoulou, N.H. et al., The Discovery of I-Brd9, a Selective Cell Active Chemical Probe for Bromodomain Containing Protein 9 Inhibition. J.Med.Chem. (2016)

Release Date

2015-04-22

Peptides

BROMODOMAIN-CONTAINING PROTEIN 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

BROMODOMAIN-CONTAINING PROTEIN 4

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