SMTL ID : 4whw.1

Direct photocapture of bromodomains using tropolone chemical probes

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.34 Å

Oligo State

monomer

Ligands

1 x 3OT: 2-methoxy-4-{1-[2-(morpholin-4-yl)ethyl]-2-(2-phenylethyl)-1H-benzimidazol-5-yl}cyclohepta-2,4,6-trien-1-one(Non-covalent)

3OT.1: 12 residues within 4Å: Chain A: W.40, P.41, F.42, Q.44, V.46, K.50, L.51, L.53, Y.56, Y.98, N.99, I.105 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:W.40, A:P.41, A:P.41, A:L.51, A:L.51, A:L.53, A:I.105 Hydrogen bonds: A:Q.44, A:N.99 Water bridges: A:C.95

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 6 residues within 4Å: Chain A: I.59, I.60, K.61, T.62, N.94, I.97 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:I.59, A:K.61, A:T.62, A:T.62, A:N.94

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hett, E.C. et al., Direct photocapture of bromodomains using tropolone chemical probes. To Be Published

Release Date

2015-10-28

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 4

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