SMTL ID : 4xy9.1

Crystal Structure of the first bromodomain of human BRD4 in complex with a 2-amine-9H-purine ligand

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.83 Å

Oligo State

monomer

Ligands

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: I.59, I.60, K.61, T.62, N.94 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:I.59, A:K.61, A:T.62, A:T.62, A:N.94

1 x 43U: 6-(5-bromo-2-methoxyphenyl)-9H-purin-2-amine(Non-covalent)

43U.2: 12 residues within 4Å: Chain A: W.40, P.41, F.42, Q.44, P.45, V.46, L.51, L.53, C.95, Y.98, N.99, I.105 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:W.40, A:L.51, A:L.51 Hydrogen bonds: A:N.99, A:N.99, A:N.99 Water bridges: A:D.47, A:C.95

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Picaud, S. et al., 9H-Purine Scaffold Reveals Induced-Fit Pocket Plasticity of the BRD9 Bromodomain. J.Med.Chem. (2015)

Release Date

2015-03-11

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 4

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