SMTL ID : 5d3p.1

First bromodomain of BRD4 bound to inhibitor XD41

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x 57E: 1-[(4-acetyl-3-ethyl-5-methyl-1H-pyrrol-2-yl)carbonyl]-N-methyl-1H-indole-6-sulfonamide(Non-covalent)

57E.1: 11 residues within 4Å: Chain A: W.40, P.41, F.42, Q.44, V.46, K.50, L.51, Y.56, Y.98, N.99, I.105 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:F.42, A:L.51, A:L.51, A:Y.56, A:Y.98, A:I.105 Hydrogen bonds: A:P.41, A:K.50, A:N.99 Water bridges: A:Q.44 pi-Stacking: A:W.40, A:W.40

1 x NI: NICKEL (II) ION(Non-covalent)

NI.2: 3 residues within 4Å: Chain A: R.17, N.80, Q.82 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hugle, M. et al., 4-Acyl Pyrrole Derivatives Yield Novel Vectors for Designing Inhibitors of the Acetyl-Lysine Recognition Site of BRD4(1). J.Med.Chem. (2016)

Release Date

2016-01-20

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 4

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